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Results: 1 to 20 of 143

Similar articles for PubMed (Select 21423704)

1.

Across bacterial phyla, distantly-related genomes with similar genomic GC content have similar patterns of amino acid usage.

Lightfield J, Fram NR, Ely B.

PLoS One. 2011 Mar 10;6(3):e17677. doi: 10.1371/journal.pone.0017677.

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Amino acid usage is asymmetrically biased in AT- and GC-rich microbial genomes.

Bohlin J, Brynildsrud O, Vesth T, Skjerve E, Ussery DW.

PLoS One. 2013 Jul 26;8(7):e69878. doi: 10.1371/journal.pone.0069878. Print 2013.

5.

Seven GC-rich microbial genomes adopt similar codon usage patterns regardless of their phylogenetic lineages.

Chen LL, Zhang CT.

Biochem Biophys Res Commun. 2003 Jun 20;306(1):310-7.

PMID:
12788106
6.

The genome of Campylobacter jejuni: codon and amino acid usage.

Fuglsang A.

APMIS. 2003 Jun;111(6):605-18.

PMID:
12969016
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Evidence of selection upon genomic GC-content in bacteria.

Hildebrand F, Meyer A, Eyre-Walker A.

PLoS Genet. 2010 Sep 9;6(9):e1001107. doi: 10.1371/journal.pgen.1001107.

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GC content-independent amino acid patterns in bacteria and archaea.

Schmidt A, Rzanny M, Schmidt A, Hagen M, Schütze E, Kothe E.

J Basic Microbiol. 2012 Apr;52(2):195-205. doi: 10.1002/jobm.201100067. Epub 2011 Jul 21.

PMID:
21780150
10.

Stabilization of secondary structure elements by specific combinations of hydrophilic and hydrophobic amino acid residues is more important for proteins encoded by GC-poor genes.

Khrustalev VV, Barkovsky EV.

Biochimie. 2012 Dec;94(12):2706-15. doi: 10.1016/j.biochi.2012.08.008. Epub 2012 Aug 21.

PMID:
22930059
11.

Rapid divergence of codon usage patterns within the rice genome.

Wang HC, Hickey DA.

BMC Evol Biol. 2007 Feb 8;7 Suppl 1:S6.

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Coupling between protein level selection and codon usage optimization in the evolution of bacteria and archaea.

Ran W, Kristensen DM, Koonin EV.

MBio. 2014 Mar 25;5(2):e00956-14. doi: 10.1128/mBio.00956-14.

15.

The evolution of biased codon and amino acid usage in nematode genomes.

Cutter AD, Wasmuth JD, Blaxter ML.

Mol Biol Evol. 2006 Dec;23(12):2303-15. Epub 2006 Aug 25.

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Codon usage in vertebrates is associated with a low risk of acquiring nonsense mutations.

Schmid P, Flegel WA.

J Transl Med. 2011 Jun 8;9:87. doi: 10.1186/1479-5876-9-87.

17.

Study of completed archaeal genomes and proteomes: hypothesis of strong mutational AT pressure existed in their common predecessor.

Khrustalev VV, Barkovsky EV.

Genomics Proteomics Bioinformatics. 2010 Mar;8(1):22-32. doi: 10.1016/S1672-0229(10)60003-4.

18.

Stop codons in bacteria are not selectively equivalent.

Povolotskaya IS, Kondrashov FA, Ledda A, Vlasov PK.

Biol Direct. 2012 Sep 13;7:30. doi: 10.1186/1745-6150-7-30.

19.

A general model of codon bias due to GC mutational bias.

Palidwor GA, Perkins TJ, Xia X.

PLoS One. 2010 Oct 27;5(10):e13431. doi: 10.1371/journal.pone.0013431.

20.

Automated isolation of translational efficiency bias that resists the confounding effect of GC(AT)-content.

Raiford DW, Krane DE, Doom TE, Raymer ML.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Apr-Jun;7(2):238-50. doi: 10.1109/TCBB.2008.65.

PMID:
20431144
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