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Results: 1 to 20 of 94

1.

The cell in an era of systems biology.

Nurse P, Hayles J.

Cell. 2011 Mar 18;144(6):850-4. doi: 10.1016/j.cell.2011.02.045.

PMID:
21414476
[PubMed - indexed for MEDLINE]
Free Article
2.

Network news: innovations in 21st century systems biology.

Arkin AP, Schaffer DV.

Cell. 2011 Mar 18;144(6):844-9. doi: 10.1016/j.cell.2011.03.008.

PMID:
21414475
[PubMed - indexed for MEDLINE]
Free Article
3.

Computational modeling in systems biology.

Vallabhajosyula RR, Raval A.

Methods Mol Biol. 2010;662:97-120. doi: 10.1007/978-1-60761-800-3_5. Review.

PMID:
20824468
[PubMed - indexed for MEDLINE]
4.

Timing matters.

Klipp E.

FEBS Lett. 2009 Dec 17;583(24):4013-8. doi: 10.1016/j.febslet.2009.11.065. Epub . Review.

PMID:
19941864
[PubMed - indexed for MEDLINE]
Free Article
5.

A cell simulator platform: the cell collective.

Helikar T, Kowal B, Rogers JA.

Clin Pharmacol Ther. 2013 May;93(5):393-5. doi: 10.1038/clpt.2013.41. Epub 2013 Feb 20.

PMID:
23549147
[PubMed - indexed for MEDLINE]
6.

Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling.

Reyes-Palomares A, Montañez R, Real-Chicharro A, Chniber O, Kerzazi A, Navas-Delgado I, Medina MA, Aldana-Montes JF, Sánchez-Jiménez F.

Bioinformatics. 2009 Mar 15;25(6):834-5. doi: 10.1093/bioinformatics/btp061. Epub 2009 Feb 2.

PMID:
19189977
[PubMed - indexed for MEDLINE]
Free Article
7.

A genome-scale, constraint-based approach to systems biology of human metabolism.

Mo ML, Jamshidi N, Palsson BØ.

Mol Biosyst. 2007 Sep;3(9):598-603. Epub 2007 Jul 11.

PMID:
17700859
[PubMed - indexed for MEDLINE]
8.

Systems biology of bacterial nitrogen fixation: high-throughput technology and its integrative description with constraint-based modeling.

Resendis-Antonio O, Hernández M, Salazar E, Contreras S, Batallar GM, Mora Y, Encarnación S.

BMC Syst Biol. 2011 Jul 29;5:120. doi: 10.1186/1752-0509-5-120.

PMID:
21801415
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Computational systems biology and dose-response modeling in relation to new directions in toxicity testing.

Zhang Q, Bhattacharya S, Andersen ME, Conolly RB.

J Toxicol Environ Health B Crit Rev. 2010 Feb;13(2-4):253-76. doi: 10.1080/10937404.2010.483943.

PMID:
20574901
[PubMed - indexed for MEDLINE]
10.

Systems biology by the rules: hybrid intelligent systems for pathway modeling and discovery.

Bosl WJ.

BMC Syst Biol. 2007 Feb 15;1:13.

PMID:
17408503
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Systems approaches to modelling pathways and networks.

Pfau T, Christian N, Ebenhöh O.

Brief Funct Genomics. 2011 Sep;10(5):266-79. doi: 10.1093/bfgp/elr022. Epub 2011 Sep 8. Review.

PMID:
21903724
[PubMed - indexed for MEDLINE]
12.

Use of genome-scale metabolic models in evolutionary systems biology.

Papp B, Szappanos B, Notebaart RA.

Methods Mol Biol. 2011;759:483-97. doi: 10.1007/978-1-61779-173-4_27. Review.

PMID:
21863504
[PubMed - indexed for MEDLINE]
13.

Developmental systems biology flourishing on new technologies.

Han JD, Liu Y, Xue H, Xia K, Yu H, Zhu S, Chen Z, Zhang W, Huang Z, Jin C, Xian B, Li J, Hou L, Han Y, Niu C, Alcon TC.

J Genet Genomics. 2008 Oct;35(10):577-84. doi: 10.1016/S1673-8527(08)60078-8.

PMID:
18937914
[PubMed - indexed for MEDLINE]
14.

Computational modeling of biochemical networks using COPASI.

Mendes P, Hoops S, Sahle S, Gauges R, Dada J, Kummer U.

Methods Mol Biol. 2009;500:17-59. doi: 10.1007/978-1-59745-525-1_2.

PMID:
19399433
[PubMed - indexed for MEDLINE]
15.

Systems analysis of plant functional, transcriptional, physical interaction, and metabolic networks.

Bassel GW, Gaudinier A, Brady SM, Hennig L, Rhee SY, De Smet I.

Plant Cell. 2012 Oct;24(10):3859-75. doi: 10.1105/tpc.112.100776. Epub 2012 Oct 30. Review.

PMID:
23110892
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Recent advances in reconstruction and applications of genome-scale metabolic models.

Kim TY, Sohn SB, Kim YB, Kim WJ, Lee SY.

Curr Opin Biotechnol. 2012 Aug;23(4):617-23. doi: 10.1016/j.copbio.2011.10.007. Epub 2011 Nov 4. Review.

PMID:
22054827
[PubMed - indexed for MEDLINE]
17.

Social pathway annotation: extensions of the systems biology metabolic modelling assistant.

Navas-Delgado I, Real-Chicharro A, Medina MÁ, Sánchez-Jiménez F, Aldana-Montes JF.

Brief Bioinform. 2011 Nov;12(6):576-87. doi: 10.1093/bib/bbq061. Epub 2010 Oct 21.

PMID:
20965999
[PubMed - indexed for MEDLINE]
Free Article
18.

Toward computational systems biology.

You L.

Cell Biochem Biophys. 2004;40(2):167-84. Review.

PMID:
15054221
[PubMed - indexed for MEDLINE]
19.

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox.

Becker SA, Feist AM, Mo ML, Hannum G, Palsson BØ, Herrgard MJ.

Nat Protoc. 2007;2(3):727-38.

PMID:
17406635
[PubMed - indexed for MEDLINE]
20.

Biochemical and statistical network models for systems biology.

Price ND, Shmulevich I.

Curr Opin Biotechnol. 2007 Aug;18(4):365-70. Epub 2007 Aug 3. Review.

PMID:
17681779
[PubMed - indexed for MEDLINE]
Free PMC Article

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