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Results: 1 to 20 of 97

1.

Microarray oligonucleotide probe designer (MOPeD): A web service.

Patel VC, Mondal K, Shetty AC, Horner VL, Bedoyan JK, Martin D, Caspary T, Cutler DJ, Zwick ME.

Open Access Bioinformatics. 2010 Nov 1;2(2010):145-155.

PMID:
21379402
[PubMed]
Free PMC Article
2.

High-density rhesus macaque oligonucleotide microarray design using early-stage rhesus genome sequence information and human genome annotations.

Wallace JC, Korth MJ, Paeper B, Proll SC, Thomas MJ, Magness CL, Iadonato SP, Nelson C, Katze MG.

BMC Genomics. 2007 Jan 23;8:28.

PMID:
17244361
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

UPS 2.0: unique probe selector for probe design and oligonucleotide microarrays at the pangenomic/genomic level.

Chen SH, Lo CZ, Su SY, Kuo BH, Hsiung CA, Lin CY.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S6. doi: 10.1186/1471-2164-11-S4-S6.

PMID:
21143815
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Experimental analysis of oligonucleotide microarray design criteria to detect deletions by comparative genomic hybridization.

Flibotte S, Moerman DG.

BMC Genomics. 2008 Oct 21;9:497. doi: 10.1186/1471-2164-9-497.

PMID:
18940006
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Empirical evaluation of oligonucleotide probe selection for DNA microarrays.

Mulle JG, Patel VC, Warren ST, Hegde MR, Cutler DJ, Zwick ME.

PLoS One. 2010 Mar 29;5(3):e9921. doi: 10.1371/journal.pone.0009921.

PMID:
20360966
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexing.

Ramos E, Levinson BT, Chasnoff S, Hughes A, Young AL, Thornton K, Li A, Vallania FL, Province M, Druley TE.

BMC Genomics. 2012 Dec 6;13:683. doi: 10.1186/1471-2164-13-683.

PMID:
23216810
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID:
15117752
[PubMed - indexed for MEDLINE]
Free Article
8.

GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs.

Risueño A, Fontanillo C, Dinger ME, De Las Rivas J.

BMC Bioinformatics. 2010 Apr 29;11:221. doi: 10.1186/1471-2105-11-221.

PMID:
20429936
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Optimized detection of sequence variation in heterozygous genomes using DNA microarrays with isothermal-melting probes.

Gresham D, Curry B, Ward A, Gordon DB, Brizuela L, Kruglyak L, Botstein D.

Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1482-7. doi: 10.1073/pnas.0913883107. Epub 2010 Jan 8.

PMID:
20080586
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Dynamic probe selection for studying microbial transcriptome with high-density genomic tiling microarrays.

Høvik H, Chen T.

BMC Bioinformatics. 2010 Feb 9;11:82. doi: 10.1186/1471-2105-11-82.

PMID:
20144223
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy.

Hu G, Llinás M, Li J, Preiser PR, Bozdech Z.

BMC Bioinformatics. 2007 Sep 19;8:350.

PMID:
17880708
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Combining microarray-based genomic selection (MGS) with the Illumina Genome Analyzer platform to sequence diploid target regions.

Okou DT, Locke AE, Steinberg KM, Hagen K, Athri P, Shetty AC, Patel V, Zwick ME.

Ann Hum Genet. 2009 Sep;73(Pt 5):502-13. doi: 10.1111/j.1469-1809.2009.00530.x. Epub 2009 Jul 1.

PMID:
19573206
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection.

Stubbs A, McClellan EA, Horsman S, Hiltemann SD, Palli I, Nouwens S, Koning AH, Hoogland F, Reumers J, Heijsman D, Swagemakers S, Kremer A, Meijerink J, Lambrechts D, van der Spek PJ.

J Clin Bioinforma. 2012 Nov 19;2(1):19. doi: 10.1186/2043-9113-2-19.

PMID:
23164068
[PubMed]
Free PMC Article
14.

Optimized design and assessment of whole genome tiling arrays.

Gräf S, Nielsen FG, Kurtz S, Huynen MA, Birney E, Stunnenberg H, Flicek P.

Bioinformatics. 2007 Jul 1;23(13):i195-204.

PMID:
17646297
[PubMed - indexed for MEDLINE]
Free Article
15.

WEP: a high-performance analysis pipeline for whole-exome data.

D'Antonio M, D'Onorio De Meo P, Paoletti D, Elmi B, Pallocca M, Sanna N, Picardi E, Pesole G, Castrignanò T.

BMC Bioinformatics. 2013;14 Suppl 7:S11. doi: 10.1186/1471-2105-14-S7-S11. Epub 2013 Apr 22.

PMID:
23815231
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Optimal design of oligonucleotide microarrays for measurement of DNA copy-number.

Sharp AJ, Itsara A, Cheng Z, Alkan C, Schwartz S, Eichler EE.

Hum Mol Genet. 2007 Nov 15;16(22):2770-9. Epub 2007 Aug 28.

PMID:
17725982
[PubMed - indexed for MEDLINE]
Free Article
17.

CEM-Designer: Design of custom expression microarrays in the post-ENCODE Era.

Arnold C, Externbrink F, Hackermüller J, Reiche K.

J Biotechnol. 2014 Nov 10;189:154-6. doi: 10.1016/j.jbiotec.2014.09.012. Epub 2014 Sep 28.

PMID:
25262644
[PubMed - in process]
18.

A Java-based tool for the design of classification microarrays.

Meng D, Broschat SL, Call DR.

BMC Bioinformatics. 2008 Aug 4;9:328. doi: 10.1186/1471-2105-9-328.

PMID:
18680597
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays.

Di X, Matsuzaki H, Webster TA, Hubbell E, Liu G, Dong S, Bartell D, Huang J, Chiles R, Yang G, Shen MM, Kulp D, Kennedy GC, Mei R, Jones KW, Cawley S.

Bioinformatics. 2005 May 1;21(9):1958-63. Epub 2005 Jan 18.

PMID:
15657097
[PubMed - indexed for MEDLINE]
Free Article
20.

SOP3v2: web-based selection of oligonucleotide primer trios for genotyping of human and mouse polymorphisms.

Ringquist S, Pecoraro C, Gilchrist CM, Styche A, Rudert WA, Benos PV, Trucco M.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W548-52.

PMID:
15980532
[PubMed - indexed for MEDLINE]
Free PMC Article

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