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Results: 1 to 20 of 99

1.

Data standards for Omics data: the basis of data sharing and reuse.

Chervitz SA, Deutsch EW, Field D, Parkinson H, Quackenbush J, Rocca-Serra P, Sansone SA, Stoeckert CJ Jr, Taylor CF, Taylor R, Ball CA.

Methods Mol Biol. 2011;719:31-69. doi: 10.1007/978-1-61779-027-0_2. Review.

PMID:
21370078
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Minimum Information about a Cardiac Electrophysiology Experiment (MICEE): standardised reporting for model reproducibility, interoperability, and data sharing.

Quinn TA, Granite S, Allessie MA, Antzelevitch C, Bollensdorff C, Bub G, Burton RA, Cerbai E, Chen PS, Delmar M, Difrancesco D, Earm YE, Efimov IR, Egger M, Entcheva E, Fink M, Fischmeister R, Franz MR, Garny A, Giles WR, Hannes T, Harding SE, Hunter PJ, Iribe G, Jalife J, Johnson CR, Kass RS, Kodama I, Koren G, Lord P, Markhasin VS, Matsuoka S, McCulloch AD, Mirams GR, Morley GE, Nattel S, Noble D, Olesen SP, Panfilov AV, Trayanova NA, Ravens U, Richard S, Rosenbaum DS, Rudy Y, Sachs F, Sachse FB, Saint DA, Schotten U, Solovyova O, Taggart P, Tung L, Varró A, Volders PG, Wang K, Weiss JN, Wettwer E, White E, Wilders R, Winslow RL, Kohl P.

Prog Biophys Mol Biol. 2011 Oct;107(1):4-10. doi: 10.1016/j.pbiomolbio.2011.07.001. Epub 2011 Jul 6.

PMID:
21745496
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Icy: an open bioimage informatics platform for extended reproducible research.

de Chaumont F, Dallongeville S, Chenouard N, Hervé N, Pop S, Provoost T, Meas-Yedid V, Pankajakshan P, Lecomte T, Le Montagner Y, Lagache T, Dufour A, Olivo-Marin JC.

Nat Methods. 2012 Jun 28;9(7):690-6. doi: 10.1038/nmeth.2075.

PMID:
22743774
[PubMed - indexed for MEDLINE]
4.

Metabolomics Standards Workshop and the development of international standards for reporting metabolomics experimental results.

Castle AL, Fiehn O, Kaddurah-Daouk R, Lindon JC.

Brief Bioinform. 2006 Jun;7(2):159-65. Epub 2006 Apr 24.

PMID:
16772263
[PubMed - indexed for MEDLINE]
Free Article
5.

Information science. Standards and infrastructure for innovation data exchange.

Haak LL, Baker D, Ginther DK, Gordon GJ, Probus MA, Kannankutty N, Weinberg BA.

Science. 2012 Oct 12;338(6104):196-7. doi: 10.1126/science.1221840. No abstract available.

PMID:
23066063
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Should software hold data hostage?

Wiley HS, Michaels GS.

Nat Biotechnol. 2004 Aug;22(8):1037-8. No abstract available.

PMID:
15286656
[PubMed - indexed for MEDLINE]
7.

Standards for reporting bioscience data: a forward look.

Taylor CF.

Drug Discov Today. 2007 Jul;12(13-14):527-33. Epub 2007 Jun 27. Review.

PMID:
17631246
[PubMed - indexed for MEDLINE]
8.

Toward more transparent and reproducible omics studies through a common metadata checklist and data publications.

Kolker E, Özdemir V, Martens L, Hancock W, Anderson G, Anderson N, Aynacioglu S, Baranova A, Campagna SR, Chen R, Choiniere J, Dearth SP, Feng WC, Ferguson L, Fox G, Frishman D, Grossman R, Heath A, Higdon R, Hutz MH, Janko I, Jiang L, Joshi S, Kel A, Kemnitz JW, Kohane IS, Kolker N, Lancet D, Lee E, Li W, Lisitsa A, Llerena A, Macnealy-Koch C, Marshall JC, Masuzzo P, May A, Mias G, Monroe M, Montague E, Mooney S, Nesvizhskii A, Noronha S, Omenn G, Rajasimha H, Ramamoorthy P, Sheehan J, Smarr L, Smith CV, Smith T, Snyder M, Rapole S, Srivastava S, Stanberry L, Stewart E, Toppo S, Uetz P, Verheggen K, Voy BH, Warnich L, Wilhelm SW, Yandl G.

OMICS. 2014 Jan;18(1):10-4. doi: 10.1089/omi.2013.0149.

PMID:
24456465
[PubMed - indexed for MEDLINE]
9.

Procurement of shared data instruments for Research Electronic Data Capture (REDCap).

Obeid JS, McGraw CA, Minor BL, Conde JG, Pawluk R, Lin M, Wang J, Banks SR, Hemphill SA, Taylor R, Harris PA.

J Biomed Inform. 2013 Apr;46(2):259-65. doi: 10.1016/j.jbi.2012.10.006. Epub 2012 Nov 10.

PMID:
23149159
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Editorial: protein systems biology: method, regulation, and network.

Chen Q, Chen M.

Curr Protein Pept Sci. 2014;15(6):519-21.

PMID:
25135673
[PubMed - in process]
11.

Managing experimental data using FuGE.

Jones AR, Lister AL.

Methods Mol Biol. 2010;604:333-43. doi: 10.1007/978-1-60761-444-9_23.

PMID:
20013382
[PubMed - indexed for MEDLINE]
12.

Funding high-throughput data sharing.

Ball CA, Sherlock G, Brazma A.

Nat Biotechnol. 2004 Sep;22(9):1179-83. No abstract available.

PMID:
15340487
[PubMed - indexed for MEDLINE]
13.

Data sharing for computational neuroscience.

Teeters JL, Harris KD, Millman KJ, Olshausen BA, Sommer FT.

Neuroinformatics. 2008 Spring;6(1):47-55. doi: 10.1007/s12021-008-9009-y. Epub 2008 Feb 8.

PMID:
18259695
[PubMed - indexed for MEDLINE]
14.

Best use of experimental data in cancer informatics.

Yong M, Begent R.

Future Oncol. 2010 Oct;6(10):1551-62. doi: 10.2217/fon.10.108. Review. Erratum in: Future Oncol. 2011 Jan;7(1):154.

PMID:
21062155
[PubMed - indexed for MEDLINE]
15.

The SEEK: a platform for sharing data and models in systems biology.

Wolstencroft K, Owen S, du Preez F, Krebs O, Mueller W, Goble C, Snoep JL.

Methods Enzymol. 2011;500:629-55. doi: 10.1016/B978-0-12-385118-5.00029-3.

PMID:
21943917
[PubMed - indexed for MEDLINE]
16.

Bioinformatics and cancer research: building bridges for translational research.

Gómez-López G, Valencia A.

Clin Transl Oncol. 2008 Feb;10(2):85-95. Review.

PMID:
18258507
[PubMed - indexed for MEDLINE]
17.

Omics data management and annotation.

Harel A, Dalah I, Pietrokovski S, Safran M, Lancet D.

Methods Mol Biol. 2011;719:71-96. doi: 10.1007/978-1-61779-027-0_3.

PMID:
21370079
[PubMed - indexed for MEDLINE]
18.

A sea of standards for omics data: sink or swim?

Tenenbaum JD, Sansone SA, Haendel M.

J Am Med Inform Assoc. 2014 Mar-Apr;21(2):200-3. doi: 10.1136/amiajnl-2013-002066. Epub 2013 Sep 27.

PMID:
24076747
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Informatics in radiology: image exchange: IHE and the evolution of image sharing.

Mendelson DS, Bak PR, Menschik E, Siegel E.

Radiographics. 2008 Nov-Dec;28(7):1817-33. doi: 10.1148/rg.287085174. Epub 2008 Sep 4.

PMID:
18772272
[PubMed - indexed for MEDLINE]
20.

Discovery and integrative neuroscience.

Koslow SH.

Clin EEG Neurosci. 2005 Apr;36(2):55-63. Review.

PMID:
15999900
[PubMed - indexed for MEDLINE]

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