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Results: 1 to 20 of 66

Similar articles for PubMed (Select 21339894)

1.

Black Box Chimera Check (B2C2): a Windows-Based Software for Batch Depletion of Chimeras from Bacterial 16S rRNA Gene Datasets.

Gontcharova V, Youn E, Wolcott RD, Hollister EB, Gentry TJ, Dowd SE.

Open Microbiol J. 2010 Aug 11;4:47-52. doi: 10.2174/1874285801004010047.

2.

Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).

Dowd SE, Zaragoza J, Rodriguez JR, Oliver MJ, Payton PR.

BMC Bioinformatics. 2005 Apr 8;6:93.

4.

PyroTrimmer: a software with GUI for pre-processing 454 amplicon sequences.

Oh J, Kim BK, Cho WS, Hong SG, Kim KM.

J Microbiol. 2012 Oct;50(5):766-9. doi: 10.1007/s12275-012-2494-6. Epub 2012 Nov 4.

PMID:
23124743
5.

Analysis of 16S rRNA amplicon sequencing options on the Roche/454 next-generation titanium sequencing platform.

Tamaki H, Wright CL, Li X, Lin Q, Hwang C, Wang S, Thimmapuram J, Kamagata Y, Liu WT.

PLoS One. 2011;6(9):e25263. doi: 10.1371/journal.pone.0025263. Epub 2011 Sep 23.

6.

V-REVCOMP: automated high-throughput detection of reverse complementary 16S rRNA gene sequences in large environmental and taxonomic datasets.

Hartmann M, Howes CG, Veldre V, Schneider S, Vaishampayan PA, Yannarell AC, Quince C, Johansson P, Björkroth KJ, Abarenkov K, Hallam SJ, Mohn WW, Nilsson RH.

FEMS Microbiol Lett. 2011 Jun;319(2):140-5. doi: 10.1111/j.1574-6968.2011.02274.x. Epub 2011 Apr 27.

7.

jMHC: software assistant for multilocus genotyping of gene families using next-generation amplicon sequencing.

Stuglik MT, Radwan J, Babik W.

Mol Ecol Resour. 2011 Jul;11(4):739-42. doi: 10.1111/j.1755-0998.2011.02997.x. Epub 2011 Feb 28.

PMID:
21676201
8.
9.

CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies.

Pandey RV, Nolte V, Schlötterer C.

BMC Res Notes. 2010 Jan 11;3:3. doi: 10.1186/1756-0500-3-3.

10.

GeneViTo: visualizing gene-product functional and structural features in genomic datasets.

Vernikos GS, Gkogkas CG, Promponas VJ, Hamodrakas SJ.

BMC Bioinformatics. 2003 Oct 31;4:53.

11.

SraTailor: graphical user interface software for processing and visualizing ChIP-seq data.

Oki S, Maehara K, Ohkawa Y, Meno C.

Genes Cells. 2014 Dec;19(12):919-26. doi: 10.1111/gtc.12190. Epub 2014 Oct 17.

PMID:
25324176
12.
13.

Tools for integrated sequence-structure analysis with UCSF Chimera.

Meng EC, Pettersen EF, Couch GS, Huang CC, Ferrin TE.

BMC Bioinformatics. 2006 Jul 12;7:339.

14.
15.

Chimera: construction of chimeric sequences for phylogenetic analysis.

Leunissen JA.

Bioinformatics. 2003 Jan 22;19(2):303-4.

16.

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments.

Huber T, Faulkner G, Hugenholtz P.

Bioinformatics. 2004 Sep 22;20(14):2317-9. Epub 2004 Apr 8.

17.

DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences.

Wright ES, Yilmaz LS, Noguera DR.

Appl Environ Microbiol. 2012 Feb;78(3):717-25. doi: 10.1128/AEM.06516-11. Epub 2011 Nov 18.

18.

GPFrontend and GPGraphics: graphical analysis tools for genetic association studies.

Uebe S, Pasutto F, Krumbiegel M, Schanze D, Ekici AB, Reis A.

BMC Bioinformatics. 2010 Sep 21;11:472. doi: 10.1186/1471-2105-11-472.

19.

Evaluation of nearest-neighbor methods for detection of chimeric small-subunit rRNA sequences.

Robison-Cox JF, Bateson MM, Ward DM.

Appl Environ Microbiol. 1995 Apr;61(4):1240-5.

20.

Discovery of commonly existing anode biofilm microbes in two different wastewater treatment MFCs using FLX Titanium pyrosequencing.

Lee TK, Van Doan T, Yoo K, Choi S, Kim C, Park J.

Appl Microbiol Biotechnol. 2010 Aug;87(6):2335-43. doi: 10.1007/s00253-010-2680-6. Epub 2010 Jun 8.

PMID:
20532761
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