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Items: 1 to 20 of 67

1.

Biomolecules under mechanical stress: a simple mechanism of complex behavior.

Suzuki Y, Dudko OK.

J Chem Phys. 2011 Feb 14;134(6):065102. doi: 10.1063/1.3533366.

PMID:
21322735
2.

Force-induced change in protein unfolding mechanism: discrete or continuous switch?

Graham TG, Best RB.

J Phys Chem B. 2011 Feb 17;115(6):1546-61. doi: 10.1021/jp110738m. Epub 2011 Jan 27.

PMID:
21271708
3.

Topography of the free-energy landscape probed via mechanical unfolding of proteins.

Kirmizialtin S, Huang L, Makarov DE.

J Chem Phys. 2005 Jun 15;122(23):234915.

PMID:
16008495
4.

Folding-unfolding of FN-III domains in tenascin: an elastically coupled two-state system.

Marín JL, Muñiz J, Huerta M, Trujillo X.

J Biomech. 2003 Nov;36(11):1733-7.

PMID:
14522216
5.

Pulling direction as a reaction coordinate for the mechanical unfolding of single molecules.

Best RB, Paci E, Hummer G, Dudko OK.

J Phys Chem B. 2008 May 15;112(19):5968-76. doi: 10.1021/jp075955j. Epub 2008 Feb 6.

PMID:
18251532
6.

Direct observation of a force-induced switch in the anisotropic mechanical unfolding pathway of a protein.

Jagannathan B, Elms PJ, Bustamante C, Marqusee S.

Proc Natl Acad Sci U S A. 2012 Oct 30;109(44):17820-5. doi: 10.1073/pnas.1201800109. Epub 2012 Sep 4.

7.
8.

Molecular dynamics simulations of a protein model in uniform and elongational flows.

Lemak AS, Lepock JR, Chen JZ.

Proteins. 2003 May 1;51(2):224-35.

PMID:
12660991
9.

Pulling geometry defines the mechanical resistance of a beta-sheet protein.

Brockwell DJ, Paci E, Zinober RC, Beddard GS, Olmsted PD, Smith DA, Perham RN, Radford SE.

Nat Struct Biol. 2003 Sep;10(9):731-7. Epub 2003 Aug 17. Erratum in: Nat Struct Biol. 2003 Oct;10(10):872.

PMID:
12923573
11.

Folding of horse cytochrome c in the reduced state.

Bhuyan AK, Udgaonkar JB.

J Mol Biol. 2001 Oct 5;312(5):1135-60.

PMID:
11580255
12.

Thermal folding and mechanical unfolding pathways of protein secondary structures.

Cieplak M, Hoang TX, Robbins MO.

Proteins. 2002 Oct 1;49(1):104-13.

PMID:
12211020
13.

Computer simulations and theory of protein translocation.

Makarov DE.

Acc Chem Res. 2009 Feb 17;42(2):281-9. doi: 10.1021/ar800128x.

PMID:
19072704
14.

Mechanics of forced unfolding of proteins.

Su T, Purohit PK.

Acta Biomater. 2009 Jul;5(6):1855-63. doi: 10.1016/j.actbio.2009.01.038. Epub 2009 Feb 3.

PMID:
19251493
15.

Ligand binding mechanics of maltose binding protein.

Bertz M, Rief M.

J Mol Biol. 2009 Nov 13;393(5):1097-105. doi: 10.1016/j.jmb.2009.08.066. Epub 2009 Sep 3.

PMID:
19733183
16.

Two-, three-, and four-state events occur in the mechanical unfolding of small protein L using molecular dynamics simulation.

Glyakina AV, Balabaev NK, Galzitskaya OV.

Protein Pept Lett. 2010 Jan;17(1):92-103.

PMID:
20214632
17.

New force replica exchange method and protein folding pathways probed by force-clamp technique.

Kouza M, Hu CK, Li MS.

J Chem Phys. 2008 Jan 28;128(4):045103. doi: 10.1063/1.2822272.

PMID:
18248010
18.

Free energy surfaces from single-molecule force spectroscopy.

Hummer G, Szabo A.

Acc Chem Res. 2005 Jul;38(7):504-13.

PMID:
16028884
19.

Computer simulations of the translocation and unfolding of a protein pulled mechanically through a pore.

Huang L, Kirmizialtin S, Makarov DE.

J Chem Phys. 2005 Sep 22;123(12):124903.

PMID:
16392523
20.

Theoretical aspects of the biological catch bond.

Prezhdo OV, Pereverzev YV.

Acc Chem Res. 2009 Jun 16;42(6):693-703. doi: 10.1021/ar800202z. Review.

PMID:
19331389
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