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Results: 1 to 20 of 78

1.

Ranking causal variants and associated regions in genome-wide association studies by the support vector machine and random forest.

Roshan U, Chikkagoudar S, Wei Z, Wang K, Hakonarson H.

Nucleic Acids Res. 2011 May;39(9):e62. doi: 10.1093/nar/gkr064. Epub 2011 Feb 11.

PMID:
21317188
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Random forests on Hadoop for genome-wide association studies of multivariate neuroimaging phenotypes.

Wang Y, Goh W, Wong L, Montana G; Alzheimer's Disease Neuroimaging Initiative.

BMC Bioinformatics. 2013;14 Suppl 16:S6. doi: 10.1186/1471-2105-14-S16-S6. Epub 2013 Oct 22.

PMID:
24564704
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Increasing power of genome-wide association studies by collecting additional single-nucleotide polymorphisms.

Kostem E, Lozano JA, Eskin E.

Genetics. 2011 Jun;188(2):449-60. doi: 10.1534/genetics.111.128595. Epub 2011 Apr 5.

PMID:
21467568
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Use of support vector machines for disease risk prediction in genome-wide association studies: concerns and opportunities.

Mittag F, Büchel F, Saad M, Jahn A, Schulte C, Bochdanovits Z, Simón-Sánchez J, Nalls MA, Keller M, Hernandez DG, Gibbs JR, Lesage S, Brice A, Heutink P, Martinez M, Wood NW, Hardy J, Singleton AB, Zell A, Gasser T, Sharma M; International Parkinson’s Disease Genomics Consortium.

Hum Mutat. 2012 Dec;33(12):1708-18. doi: 10.1002/humu.22161. Epub 2012 Aug 3.

PMID:
22777693
[PubMed - indexed for MEDLINE]
5.

Identification of type 2 diabetes-associated combination of SNPs using support vector machine.

Ban HJ, Heo JY, Oh KS, Park KJ.

BMC Genet. 2010 Apr 23;11:26. doi: 10.1186/1471-2156-11-26.

PMID:
20416077
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

SNP in the genome-wide association study hotspot on chromosome 9p21 confers susceptibility to diabetic nephropathy in type 1 diabetes.

Fagerholm E, Ahlqvist E, Forsblom C, Sandholm N, Syreeni A, Parkkonen M, McKnight AJ, Tarnow L, Maxwell AP, Parving HH, Groop L, Groop PH; FinnDiane Study Group.

Diabetologia. 2012 Sep;55(9):2386-93. Epub 2012 May 29.

PMID:
22643932
[PubMed - indexed for MEDLINE]
7.

Multiple testing in genome-wide association studies via hidden Markov models.

Wei Z, Sun W, Wang K, Hakonarson H.

Bioinformatics. 2009 Nov 1;25(21):2802-8. doi: 10.1093/bioinformatics/btp476. Epub 2009 Aug 4.

PMID:
19654115
[PubMed - indexed for MEDLINE]
Free Article
8.

Ranking of genome-wide association scan signals by different measures.

Strömberg U, Björk J, Vineis P, Broberg K, Zeggini E.

Int J Epidemiol. 2009 Oct;38(5):1364-73. doi: 10.1093/ije/dyp285. Epub 2009 Sep 4.

PMID:
19734549
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

From disease association to risk assessment: an optimistic view from genome-wide association studies on type 1 diabetes.

Wei Z, Wang K, Qu HQ, Zhang H, Bradfield J, Kim C, Frackleton E, Hou C, Glessner JT, Chiavacci R, Stanley C, Monos D, Grant SF, Polychronakos C, Hakonarson H.

PLoS Genet. 2009 Oct;5(10):e1000678. doi: 10.1371/journal.pgen.1000678. Epub 2009 Oct 9.

PMID:
19816555
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Performance of random forest when SNPs are in linkage disequilibrium.

Meng YA, Yu Y, Cupples LA, Farrer LA, Lunetta KL.

BMC Bioinformatics. 2009 Mar 5;10:78. doi: 10.1186/1471-2105-10-78.

PMID:
19265542
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Data mining of high density genomic variant data for prediction of Alzheimer's disease risk.

Briones N, Dinu V.

BMC Med Genet. 2012 Jan 25;13:7. doi: 10.1186/1471-2350-13-7.

PMID:
22273362
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

SNP-based pathway enrichment analysis for genome-wide association studies.

Weng L, Macciardi F, Subramanian A, Guffanti G, Potkin SG, Yu Z, Xie X.

BMC Bioinformatics. 2011 Apr 15;12:99. doi: 10.1186/1471-2105-12-99.

PMID:
21496265
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome-wide searching of rare genetic variants in WTCCC data.

Feng T, Zhu X.

Hum Genet. 2010 Sep;128(3):269-80. doi: 10.1007/s00439-010-0849-9. Epub 2010 Jun 13.

PMID:
20549515
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome Wide Association Study to predict severe asthma exacerbations in children using random forests classifiers.

Xu M, Tantisira KG, Wu A, Litonjua AA, Chu JH, Himes BE, Damask A, Weiss ST.

BMC Med Genet. 2011 Jun 30;12:90. doi: 10.1186/1471-2350-12-90.

PMID:
21718536
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Phenotype prediction from genome-wide association studies: application to smoking behaviors.

Yoon D, Kim YJ, Park T.

BMC Syst Biol. 2012;6 Suppl 2:S11. doi: 10.1186/1752-0509-6-S2-S11. Epub 2012 Dec 12.

PMID:
23281841
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

SNP selection and classification of genome-wide SNP data using stratified sampling random forests.

Wu Q, Ye Y, Liu Y, Ng MK.

IEEE Trans Nanobioscience. 2012 Sep;11(3):216-27. doi: 10.1109/TNB.2012.2214232.

PMID:
22987127
[PubMed - indexed for MEDLINE]
17.

Statistical geometry based prediction of nonsynonymous SNP functional effects using random forest and neuro-fuzzy classifiers.

Barenboim M, Masso M, Vaisman II, Jamison DC.

Proteins. 2008 Jun;71(4):1930-9. doi: 10.1002/prot.21838.

PMID:
18186470
[PubMed - indexed for MEDLINE]
18.

SNP selection in genome-wide association studies via penalized support vector machine with MAX test.

Kim J, Sohn I, Kim DD, Jung SH.

Comput Math Methods Med. 2013;2013:340678. doi: 10.1155/2013/340678. Epub 2013 Sep 24.

PMID:
24174989
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Random forests for genetic association studies.

Goldstein BA, Polley EC, Briggs FB.

Stat Appl Genet Mol Biol. 2011;10(1):32. doi: 10.2202/1544-6115.1691. Epub 2011 Jul 12. Review.

PMID:
22889876
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome-wide prediction of discrete traits using Bayesian regressions and machine learning.

González-Recio O, Forni S.

Genet Sel Evol. 2011 Feb 17;43:7. doi: 10.1186/1297-9686-43-7.

PMID:
21329522
[PubMed - indexed for MEDLINE]
Free PMC Article

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