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Items: 1 to 20 of 105

1.

LOHAS: loss-of-heterozygosity analysis suite.

Yang HC, Chang LC, Huggins RM, Chen CH, Mullighan CG.

Genet Epidemiol. 2011 May;35(4):247-60.

PMID:
21312262
2.

Nonparametric estimation of LOH using Affymetrix SNP genotyping arrays for unpaired samples.

Huggins R, Li LH, Lin YC, Yu AL, Yang HC.

J Hum Genet. 2008;53(11-12):983-90. doi: 10.1007/s10038-008-0340-9. Epub 2008 Nov 7.

PMID:
18989737
3.

Long contiguous stretches of homozygosity in the human genome.

Li LH, Ho SF, Chen CH, Wei CY, Wong WC, Li LY, Hung SI, Chung WH, Pan WH, Lee MT, Tsai FJ, Chang CF, Wu JY, Chen YT.

Hum Mutat. 2006 Nov;27(11):1115-21.

PMID:
16955415
4.

Direct inference of SNP heterozygosity rates and resolution of LOH detection.

Li X, Self SG, Galipeau PC, Paulson TG, Reid BJ.

PLoS Comput Biol. 2007 Nov;3(11):e244.

5.

An integrated analysis tool for analyzing hybridization intensities and genotypes using new-generation population-optimized human arrays.

Huang MC, Chuang TP, Chen CH, Wu JY, Chen YT, Li LH, Yang HC.

BMC Genomics. 2016 Mar 31;17:266. doi: 10.1186/s12864-016-2478-8.

6.

A new method to detect loss of heterozygosity using cohort heterozygosity comparisons.

Green MR, Jardine P, Wood P, Wellwood J, Lea RA, Marlton P, Griffiths LR.

BMC Cancer. 2010 May 12;10:195. doi: 10.1186/1471-2407-10-195.

7.

Comprehensive evaluation of imputation performance in African Americans.

Chanda P, Yuhki N, Li M, Bader JS, Hartz A, Boerwinkle E, Kao WH, Arking DE.

J Hum Genet. 2012 Jul;57(7):411-21. doi: 10.1038/jhg.2012.43. Epub 2012 May 31.

8.

ETHNOPRED: a novel machine learning method for accurate continental and sub-continental ancestry identification and population stratification correction.

Hajiloo M, Sapkota Y, Mackey JR, Robson P, Greiner R, Damaraju S.

BMC Bioinformatics. 2013 Feb 22;14:61. doi: 10.1186/1471-2105-14-61.

9.

Frequent loss of heterozygosity on the long arm of chromosome 6: identification of two distinct regions of deletion in childhood acute lymphoblastic leukemia.

Takeuchi S, Koike M, Seriu T, Bartram CR, Schrappe M, Reiter A, Park S, Taub HE, Kubonishi I, Miyoshi I, Koeffler HP.

Cancer Res. 1998 Jun 15;58(12):2618-23.

10.

Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays.

Beroukhim R, Lin M, Park Y, Hao K, Zhao X, Garraway LA, Fox EA, Hochberg EP, Mellinghoff IK, Hofer MD, Descazeaud A, Rubin MA, Meyerson M, Wong WH, Sellers WR, Li C.

PLoS Comput Biol. 2006 May;2(5):e41. Epub 2006 May 12.

12.

Conditional random pattern algorithm for LOH inference and segmentation.

Wu LY, Zhou X, Li F, Yang X, Chang CC, Wong ST.

Bioinformatics. 2009 Jan 1;25(1):61-7. doi: 10.1093/bioinformatics/btn561. Epub 2008 Oct 29.

13.

Accuracy of genome-wide imputation of untyped markers and impacts on statistical power for association studies.

Hao K, Chudin E, McElwee J, Schadt EE.

BMC Genet. 2009 Jun 16;10:27. doi: 10.1186/1471-2156-10-27.

14.

Extended tracts of homozygosity in outbred human populations.

Gibson J, Morton NE, Collins A.

Hum Mol Genet. 2006 Mar 1;15(5):789-95. Epub 2006 Jan 25.

15.

Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer.

Kloth JN, Oosting J, van Wezel T, Szuhai K, Knijnenburg J, Gorter A, Kenter GG, Fleuren GJ, Jordanova ES.

BMC Genomics. 2007 Feb 20;8:53.

16.

Pathogenic aberrations revealed exclusively by single nucleotide polymorphism (SNP) genotyping data in 5000 samples tested by molecular karyotyping.

Bruno DL, White SM, Ganesamoorthy D, Burgess T, Butler K, Corrie S, Francis D, Hills L, Prabhakara K, Ngo C, Norris F, Oertel R, Pertile MD, Stark Z, Amor DJ, Slater HR.

J Med Genet. 2011 Dec;48(12):831-9. doi: 10.1136/jmedgenet-2011-100372. Epub 2011 Oct 29.

PMID:
22039585
17.
18.

The structure of haplotype blocks in the human genome.

Gabriel SB, Schaffner SF, Nguyen H, Moore JM, Roy J, Blumenstiel B, Higgins J, DeFelice M, Lochner A, Faggart M, Liu-Cordero SN, Rotimi C, Adeyemo A, Cooper R, Ward R, Lander ES, Daly MJ, Altshuler D.

Science. 2002 Jun 21;296(5576):2225-9. Epub 2002 May 23.

19.

A genome-wide analysis of population structure in the Finnish Saami with implications for genetic association studies.

Huyghe JR, Fransen E, Hannula S, Van Laer L, Van Eyken E, Mäki-Torkko E, Aikio P, Sorri M, Huentelman MJ, Van Camp G.

Eur J Hum Genet. 2011 Mar;19(3):347-52. doi: 10.1038/ejhg.2010.179. Epub 2010 Dec 8.

20.

Frequent occurrence of uniparental disomy in colorectal cancer.

Andersen CL, Wiuf C, Kruhøffer M, Korsgaard M, Laurberg S, Ørntoft TF.

Carcinogenesis. 2007 Jan;28(1):38-48. Epub 2006 Jun 13.

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