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Results: 1 to 20 of 144

1.

Cost-effective cloud computing: a case study using the comparative genomics tool, roundup.

Kudtarkar P, Deluca TF, Fusaro VA, Tonellato PJ, Wall DP.

Evol Bioinform Online. 2010 Dec 22;6:197-203. doi: 10.4137/EBO.S6259.

PMID:
21258651
[PubMed]
Free PMC Article
2.

Cloud computing for comparative genomics.

Wall DP, Kudtarkar P, Fusaro VA, Pivovarov R, Patil P, Tonellato PJ.

BMC Bioinformatics. 2010 May 18;11:259. doi: 10.1186/1471-2105-11-259.

PMID:
20482786
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Cloud computing for comparative genomics with windows azure platform.

Kim I, Jung JY, Deluca TF, Nelson TH, Wall DP.

Evol Bioinform Online. 2012;8:527-34. doi: 10.4137/EBO.S9946. Epub 2012 Aug 30.

PMID:
23032609
[PubMed]
Free PMC Article
4.

Galaxy CloudMan: delivering cloud compute clusters.

Afgan E, Baker D, Coraor N, Chapman B, Nekrutenko A, Taylor J.

BMC Bioinformatics. 2010 Dec 21;11 Suppl 12:S4. doi: 10.1186/1471-2105-11-S12-S4.

PMID:
21210983
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Processing shotgun proteomics data on the Amazon Cloud with the Trans-Proteomic Pipeline.

Slagel J, Mendoza L, Shteynberg D, Deutsch EW, Moritz RL.

Mol Cell Proteomics. 2014 Nov 23. pii: mcp.O114.043380. [Epub ahead of print]

PMID:
25418363
[PubMed - as supplied by publisher]
Free Article
6.

Resources and costs for microbial sequence analysis evaluated using virtual machines and cloud computing.

Angiuoli SV, White JR, Matalka M, White O, Fricke WF.

PLoS One. 2011;6(10):e26624. doi: 10.1371/journal.pone.0026624. Epub 2011 Oct 19.

PMID:
22028928
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

CloudDOE: a user-friendly tool for deploying Hadoop clouds and analyzing high-throughput sequencing data with MapReduce.

Chung WC, Chen CC, Ho JM, Lin CY, Hsu WL, Wang YC, Lee DT, Lai F, Huang CW, Chang YJ.

PLoS One. 2014 Jun 4;9(6):e98146. doi: 10.1371/journal.pone.0098146. eCollection 2014.

PMID:
24897343
[PubMed - in process]
Free PMC Article
8.

Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community.

Krampis K, Booth T, Chapman B, Tiwari B, Bicak M, Field D, Nelson KE.

BMC Bioinformatics. 2012 Mar 19;13:42. doi: 10.1186/1471-2105-13-42.

PMID:
22429538
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing.

Angiuoli SV, Matalka M, Gussman A, Galens K, Vangala M, Riley DR, Arze C, White JR, White O, Fricke WF.

BMC Bioinformatics. 2011 Aug 30;12:356. doi: 10.1186/1471-2105-12-356.

PMID:
21878105
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Rainbow: a tool for large-scale whole-genome sequencing data analysis using cloud computing.

Zhao S, Prenger K, Smith L, Messina T, Fan H, Jaeger E, Stephens S.

BMC Genomics. 2013 Jun 27;14:425. doi: 10.1186/1471-2164-14-425.

PMID:
23802613
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Exploiting parallel R in the cloud with SPRINT.

Piotrowski M, McGilvary GA, Sloan TM, Mewissen M, Lloyd AD, Forster T, Mitchell L, Ghazal P, Hill J.

Methods Inf Med. 2013;52(1):80-90. doi: 10.3414/ME11-02-0039. Epub 2012 Dec 7.

PMID:
23223611
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Atlas2 Cloud: a framework for personal genome analysis in the cloud.

Evani US, Challis D, Yu J, Jackson AR, Paithankar S, Bainbridge MN, Jakkamsetti A, Pham P, Coarfa C, Milosavljevic A, Yu F.

BMC Genomics. 2012;13 Suppl 6:S19. doi: 10.1186/1471-2164-13-S6-S19. Epub 2012 Oct 26.

PMID:
23134663
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Now and next-generation sequencing techniques: future of sequence analysis using cloud computing.

Thakur RS, Bandopadhyay R, Chaudhary B, Chatterjee S.

Front Genet. 2012 Dec 11;3:280. doi: 10.3389/fgene.2012.00280. eCollection 2012.

PMID:
23248640
[PubMed]
Free PMC Article
14.

Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package.

El-Kalioby M, Abouelhoda M, Kr├╝ger J, Giegerich R, Sczyrba A, Wall DP, Tonellato P.

BMC Bioinformatics. 2012;13 Suppl 17:S22. doi: 10.1186/1471-2105-13-S17-S22. Epub 2012 Dec 13.

PMID:
23281941
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Low cost, scalable proteomics data analysis using Amazon's cloud computing services and open source search algorithms.

Halligan BD, Geiger JF, Vallejos AK, Greene AS, Twigger SN.

J Proteome Res. 2009 Jun;8(6):3148-53. doi: 10.1021/pr800970z.

PMID:
19358578
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Using cloud computing infrastructure with CloudBioLinux, CloudMan, and Galaxy.

Afgan E, Chapman B, Jadan M, Franke V, Taylor J.

Curr Protoc Bioinformatics. 2012 Jun;Chapter 11:Unit11.9. doi: 10.1002/0471250953.bi1109s38.

PMID:
22700313
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Benchmarking undedicated cloud computing providers for analysis of genomic datasets.

Yazar S, Gooden GE, Mackey DA, Hewitt AW.

PLoS One. 2014 Sep 23;9(9):e108490. doi: 10.1371/journal.pone.0108490. eCollection 2014.

PMID:
25247298
[PubMed - in process]
Free PMC Article
18.

Scaling predictive modeling in drug development with cloud computing.

Moghadam BT, Alvarsson J, Holm M, Eklund M, Carlsson L, Spjuth O.

J Chem Inf Model. 2015 Jan 26;55(1):19-25. doi: 10.1021/ci500580y. Epub 2015 Jan 8.

PMID:
25493610
[PubMed - in process]
19.

Application of microarray analysis on computer cluster and cloud platforms.

Bernau C, Boulesteix AL, Knaus J.

Methods Inf Med. 2013;52(1):65-71. doi: 10.3414/ME11-02-0043. Epub 2012 Nov 27.

PMID:
23188517
[PubMed - indexed for MEDLINE]
20.

Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets.

Heath AP, Greenway M, Powell R, Spring J, Suarez R, Hanley D, Bandlamudi C, McNerney ME, White KP, Grossman RL.

J Am Med Inform Assoc. 2014 Nov-Dec;21(6):969-75. doi: 10.1136/amiajnl-2013-002155. Epub 2014 Jan 24.

PMID:
24464852
[PubMed - in process]
Free PMC Article

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