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Results: 1 to 20 of 141

1.

On optimal pooling designs to identify rare variants through massive resequencing.

Lee JS, Choi M, Yan X, Lifton RP, Zhao H.

Genet Epidemiol. 2011 Apr;35(3):139-47. doi: 10.1002/gepi.20561. Epub 2011 Jan 19.

PMID:
21254222
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Design of association studies with pooled or un-pooled next-generation sequencing data.

Kim SY, Li Y, Guo Y, Li R, Holmkvist J, Hansen T, Pedersen O, Wang J, Nielsen R.

Genet Epidemiol. 2010 Jul;34(5):479-91. doi: 10.1002/gepi.20501.

PMID:
20552648
[PubMed - indexed for MEDLINE]
3.

Implication of next-generation sequencing on association studies.

Siu H, Zhu Y, Jin L, Xiong M.

BMC Genomics. 2011 Jun 17;12:322. doi: 10.1186/1471-2164-12-322.

PMID:
21682891
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A unified approach for allele frequency estimation, SNP detection and association studies based on pooled sequencing data using EM algorithms.

Chen Q, Sun F.

BMC Genomics. 2013;14 Suppl 1:S1. doi: 10.1186/1471-2164-14-S1-S1. Epub 2013 Jan 21.

PMID:
23369070
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A statistical method for the detection of variants from next-generation resequencing of DNA pools.

Bansal V.

Bioinformatics. 2010 Jun 15;26(12):i318-24. doi: 10.1093/bioinformatics/btq214.

PMID:
20529923
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A novel genome-information content-based statistic for genome-wide association analysis designed for next-generation sequencing data.

Luo L, Zhu Y, Xiong M.

J Comput Biol. 2012 Jun;19(6):731-44. doi: 10.1089/cmb.2012.0035. Epub 2012 May 31.

PMID:
22651812
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Identifying rare variants with optimal depth of coverage and cost-effective overlapping pool sequencing.

Cao CC, Li C, Huang Z, Ma X, Sun X.

Genet Epidemiol. 2013 Dec;37(8):820-30. doi: 10.1002/gepi.21769. Epub 2013 Oct 28.

PMID:
24166758
[PubMed - indexed for MEDLINE]
Free Article
8.

Design considerations for genetic linkage and association studies.

Nsengimana J, Bishop DT.

Methods Mol Biol. 2012;850:237-62. doi: 10.1007/978-1-61779-555-8_13.

PMID:
22307702
[PubMed - indexed for MEDLINE]
9.

Population-based rare variant detection via pooled exome or custom hybridization capture with or without individual indexing.

Ramos E, Levinson BT, Chasnoff S, Hughes A, Young AL, Thornton K, Li A, Vallania FL, Province M, Druley TE.

BMC Genomics. 2012 Dec 6;13:683. doi: 10.1186/1471-2164-13-683.

PMID:
23216810
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

DNA pooling and statistical tests for the detection of single nucleotide polymorphisms.

Ramsey DM, Futschik A.

Stat Appl Genet Mol Biol. 2012 Sep 25;11(5):Article 1. doi: 10.1515/1544-6115.1763.

PMID:
23023700
[PubMed - indexed for MEDLINE]
11.

SNP calling by sequencing pooled samples.

Raineri E, Ferretti L, Esteve-Codina A, Nevado B, Heath S, PĂ©rez-Enciso M.

BMC Bioinformatics. 2012 Sep 20;13:239. doi: 10.1186/1471-2105-13-239.

PMID:
22992255
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Detection of rare genomic variants from pooled sequencing using SPLINTER.

Vallania F, Ramos E, Cresci S, Mitra RD, Druley TE.

J Vis Exp. 2012 Jun 23;(64). pii: 3943. doi: 10.3791/3943.

PMID:
22760212
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Resequencing of pooled DNA for detecting disease associations with rare variants.

Wang T, Lin CY, Rohan TE, Ye K.

Genet Epidemiol. 2010 Jul;34(5):492-501. doi: 10.1002/gepi.20502.

PMID:
20578089
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Discovery of rare variants via sequencing: implications for the design of complex trait association studies.

Li B, Leal SM.

PLoS Genet. 2009 May;5(5):e1000481. doi: 10.1371/journal.pgen.1000481. Epub 2009 May 15.

PMID:
19436704
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Rare variant association testing under low-coverage sequencing.

Navon O, Sul JH, Han B, Conde L, Bracci PM, Riby J, Skibola CF, Eskin E, Halperin E.

Genetics. 2013 Jul;194(3):769-79. doi: 10.1534/genetics.113.150169. Epub 2013 May 1.

PMID:
23636738
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Overlapping pools for high-throughput targeted resequencing.

Prabhu S, Pe'er I.

Genome Res. 2009 Jul;19(7):1254-61. doi: 10.1101/gr.088559.108. Epub 2009 May 15.

PMID:
19447964
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Biases and errors on allele frequency estimation and disease association tests of next-generation sequencing of pooled samples.

Chen X, Listman JB, Slack FJ, Gelernter J, Zhao H.

Genet Epidemiol. 2012 Sep;36(6):549-60. doi: 10.1002/gepi.21648. Epub 2012 Jun 6.

PMID:
22674656
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Weighted pooling--practical and cost-effective techniques for pooled high-throughput sequencing.

Golan D, Erlich Y, Rosset S.

Bioinformatics. 2012 Jun 15;28(12):i197-206. doi: 10.1093/bioinformatics/bts208.

PMID:
22689761
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

NDesign: software for study design for the detection of rare variants from next-generation sequencing data.

Sugaya Y, Akazawa Y, Saito A, Kamitsuji S.

J Hum Genet. 2012 Oct;57(10):676-8. doi: 10.1038/jhg.2012.81. Epub 2012 Jul 12.

PMID:
22786579
[PubMed - indexed for MEDLINE]
20.

Reconsidering association testing methods using single-variant test statistics as alternatives to pooling tests for sequence data with rare variants.

Kinnamon DD, Hershberger RE, Martin ER.

PLoS One. 2012;7(2):e30238. doi: 10.1371/journal.pone.0030238. Epub 2012 Feb 17.

PMID:
22363423
[PubMed - indexed for MEDLINE]
Free PMC Article

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