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Items: 1 to 20 of 111


LPS-annotate: complete annotation of compositionally biased regions in the protein knowledgebase.

Harbi D, Kumar M, Harrison PM.

Database (Oxford). 2011 Jan 6;2011:baq031. doi: 10.1093/database/baq031. Print 2011.


Dictionary-driven protein annotation.

Rigoutsos I, Huynh T, Floratos A, Parida L, Platt D.

Nucleic Acids Res. 2002 Sep 1;30(17):3901-16.


ProBias: a web-server for the identification of user-specified types of compositionally biased segments in protein sequences.

Kuznetsov IB.

Bioinformatics. 2008 Jul 1;24(13):1534-5. doi: 10.1093/bioinformatics/btn233. Epub 2008 May 14.


DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.


MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.


COPid: composition based protein identification.

Kumar M, Thakur V, Raghava GP.

In Silico Biol. 2008;8(2):121-8.


ProFAT: a web-based tool for the functional annotation of protein sequences.

Bradshaw CR, Surendranath V, Habermann B.

BMC Bioinformatics. 2006 Oct 23;7:466.


LCR-eXXXplorer: a web platform to search, visualize and share data for low complexity regions in protein sequences.

Kirmitzoglou I, Promponas VJ.

Bioinformatics. 2015 Jul 1;31(13):2208-10. doi: 10.1093/bioinformatics/btv115. Epub 2015 Feb 20.


MeDor: a metaserver for predicting protein disorder.

Lieutaud P, Canard B, Longhi S.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S25. doi: 10.1186/1471-2164-9-S2-S25.


PrionHome: a database of prions and other sequences relevant to prion phenomena.

Harbi D, Parthiban M, Gendoo DM, Ehsani S, Kumar M, Schmitt-Ulms G, Sowdhamini R, Harrison PM.

PLoS One. 2012;7(2):e31785. doi: 10.1371/journal.pone.0031785. Epub 2012 Feb 20.


ProtRepeatsDB: a database of amino acid repeats in genomes.

Kalita MK, Ramasamy G, Duraisamy S, Chauhan VS, Gupta D.

BMC Bioinformatics. 2006 Jul 7;7:336.


PCHM: A bioinformatic resource for high-throughput human mitochondrial proteome searching and comparison.

Kim T, Kim E, Park SJ, Joo H.

Comput Biol Med. 2009 Aug;39(8):689-96. doi: 10.1016/j.compbiomed.2009.05.006. Epub 2009 Jun 21.


Automatic annotation of protein function based on family identification.

Abascal F, Valencia A.

Proteins. 2003 Nov 15;53(3):683-92.


MESSA: MEta-Server for protein Sequence Analysis.

Cong Q, Grishin NV.

BMC Biol. 2012 Oct 2;10:82. doi: 10.1186/1741-7007-10-82.


WILMA-automated annotation of protein sequences.

Prlić A, Domingues FS, Lackner P, Sippl MJ.

Bioinformatics. 2004 Jan 1;20(1):127-8.


The Universal Protein Resource (UniProt).

Bairoch A, Apweiler R, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D154-9.


PrDOS: prediction of disordered protein regions from amino acid sequence.

Ishida T, Kinoshita K.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W460-4. Epub 2007 Jun 12.


KB-Rank: efficient protein structure and functional annotation identification via text query.

Julfayev ES, McLaughlin RJ, Tao YP, McLaughlin WA.

J Struct Funct Genomics. 2012 Jun;13(2):101-10. doi: 10.1007/s10969-012-9125-7. Epub 2012 Jan 21.


An extensible automated protein annotation tool: standardizing input and output using validated XML.

Deevi SV, Martin AC.

Bioinformatics. 2006 Feb 1;22(3):291-6. Epub 2005 Dec 8.

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