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Results: 1 to 20 of 207

1.

Systematic evaluation of genome-wide methylated DNA enrichment using a CpG island array.

Yang L, Zhang K, Dai W, He X, Zhao Q, Wang J, Sun ZS.

BMC Genomics. 2011 Jan 6;12:10. doi: 10.1186/1471-2164-12-10.

PMID:
21211017
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

MMASS: an optimized array-based method for assessing CpG island methylation.

Ibrahim AE, Thorne NP, Baird K, Barbosa-Morais NL, Tavaré S, Collins VP, Wyllie AH, Arends MJ, Brenton JD.

Nucleic Acids Res. 2006;34(20):e136. Epub 2006 Oct 13.

PMID:
17041235
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Estimating absolute methylation levels at single-CpG resolution from methylation enrichment and restriction enzyme sequencing methods.

Stevens M, Cheng JB, Li D, Xie M, Hong C, Maire CL, Ligon KL, Hirst M, Marra MA, Costello JF, Wang T.

Genome Res. 2013 Sep;23(9):1541-53. doi: 10.1101/gr.152231.112. Epub 2013 Jun 26.

PMID:
23804401
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Analyzing the cancer methylome through targeted bisulfite sequencing.

Lee EJ, Luo J, Wilson JM, Shi H.

Cancer Lett. 2013 Nov 1;340(2):171-8. doi: 10.1016/j.canlet.2012.10.040. Epub 2012 Nov 28. Review.

PMID:
23200671
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A comparison of the whole genome approach of MeDIP-seq to the targeted approach of the Infinium HumanMethylation450 BeadChip(®) for methylome profiling.

Clark C, Palta P, Joyce CJ, Scott C, Grundberg E, Deloukas P, Palotie A, Coffey AJ.

PLoS One. 2012;7(11):e50233. doi: 10.1371/journal.pone.0050233. Epub 2012 Nov 29.

PMID:
23209683
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Whole genome DNA methylation analysis based on high throughput sequencing technology.

Li N, Ye M, Li Y, Yan Z, Butcher LM, Sun J, Han X, Chen Q, Zhang X, Wang J.

Methods. 2010 Nov;52(3):203-12. doi: 10.1016/j.ymeth.2010.04.009. Epub 2010 Apr 27.

PMID:
20430099
[PubMed - indexed for MEDLINE]
7.

Methylation profiling using methylated DNA immunoprecipitation and tiling array hybridization.

Cheung HH, Lee TL, Rennert OM, Chan WY.

Methods Mol Biol. 2012;825:115-26. doi: 10.1007/978-1-61779-436-0_10.

PMID:
22144241
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Assessment of methylation level prediction accuracy in methyl-DNA immunoprecipitation and sodium bisulfite based microarray platforms.

Rajendram R, Ferreira JC, Grafodatskaya D, Choufani S, Chiang T, Pu S, Butcher DT, Wodak SJ, Weksberg R.

Epigenetics. 2011 Apr;6(4):410-5. Epub 2011 Apr 1.

PMID:
21343703
[PubMed - indexed for MEDLINE]
Free Article
9.

MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment.

Pelizzola M, Koga Y, Urban AE, Krauthammer M, Weissman S, Halaban R, Molinaro AM.

Genome Res. 2008 Oct;18(10):1652-9. doi: 10.1101/gr.080721.108. Epub 2008 Sep 2.

PMID:
18765822
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias.

Nair SS, Coolen MW, Stirzaker C, Song JZ, Statham AL, Strbenac D, Robinson MD, Clark SJ.

Epigenetics. 2011 Jan;6(1):34-44. doi: 10.4161/epi.6.1.13313. Epub 2011 Jan 1.

PMID:
20818161
[PubMed - indexed for MEDLINE]
Free Article
11.

Genome wide analysis of acute myeloid leukemia reveal leukemia specific methylome and subtype specific hypomethylation of repeats.

Saied MH, Marzec J, Khalid S, Smith P, Down TA, Rakyan VK, Molloy G, Raghavan M, Debernardi S, Young BD.

PLoS One. 2012;7(3):e33213. doi: 10.1371/journal.pone.0033213. Epub 2012 Mar 29.

PMID:
22479372
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Methylation-specific oligonucleotide microarray: a new potential for high-throughput methylation analysis.

Gitan RS, Shi H, Chen CM, Yan PS, Huang TH.

Genome Res. 2002 Jan;12(1):158-64.

PMID:
11779841
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

High-throughput methylation profiling by MCA coupled to CpG island microarray.

Estécio MR, Yan PS, Ibrahim AE, Tellez CS, Shen L, Huang TH, Issa JP.

Genome Res. 2007 Oct;17(10):1529-36. Epub 2007 Sep 4.

PMID:
17785535
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation.

Li D, Zhang B, Xing X, Wang T.

Methods. 2014 Nov 6. pii: S1046-2023(14)00359-4. doi: 10.1016/j.ymeth.2014.10.032. [Epub ahead of print]

PMID:
25448294
[PubMed - as supplied by publisher]
15.

Genome-scale DNA methylation analysis.

Fouse SD, Nagarajan RO, Costello JF.

Epigenomics. 2010 Feb;2(1):105-17. doi: 10.2217/epi.09.35. Review.

PMID:
20657796
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Methylated DNA immunoprecipitation (MeDIP).

Mohn F, Weber M, Schübeler D, Roloff TC.

Methods Mol Biol. 2009;507:55-64. doi: 10.1007/978-1-59745-522-0_5.

PMID:
18987806
[PubMed - indexed for MEDLINE]
17.

Differential methylation hybridization: profiling DNA methylation with a high-density CpG island microarray.

Yan PS, Potter D, Deatherage DE, Huang TH, Lin S.

Methods Mol Biol. 2009;507:89-106. doi: 10.1007/978-1-59745-522-0_8.

PMID:
18987809
[PubMed - indexed for MEDLINE]
18.

MeDIP-HMM: genome-wide identification of distinct DNA methylation states from high-density tiling arrays.

Seifert M, Cortijo S, Colomé-Tatché M, Johannes F, Roudier F, Colot V.

Bioinformatics. 2012 Nov 15;28(22):2930-9. doi: 10.1093/bioinformatics/bts562. Epub 2012 Sep 17.

PMID:
22989518
[PubMed - indexed for MEDLINE]
Free Article
19.

High density DNA methylation array with single CpG site resolution.

Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R.

Genomics. 2011 Oct;98(4):288-95. doi: 10.1016/j.ygeno.2011.07.007. Epub 2011 Aug 2.

PMID:
21839163
[PubMed - indexed for MEDLINE]
Free Article
20.

Comprehensive high-throughput arrays for relative methylation (CHARM).

Irizarry RA, Ladd-Acosta C, Carvalho B, Wu H, Brandenburg SA, Jeddeloh JA, Wen B, Feinberg AP.

Genome Res. 2008 May;18(5):780-90. doi: 10.1101/gr.7301508. Epub 2008 Mar 3.

PMID:
18316654
[PubMed - indexed for MEDLINE]
Free PMC Article

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