Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 103

1.

Structural and thermodynamic analysis of PDZ-ligand interactions.

Shepherd TR, Fuentes EJ.

Methods Enzymol. 2011;488:81-100. doi: 10.1016/B978-0-12-381268-1.00004-5.

PMID:
21195225
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Distinct ligand specificity of the Tiam1 and Tiam2 PDZ domains.

Shepherd TR, Hard RL, Murray AM, Pei D, Fuentes EJ.

Biochemistry. 2011 Mar 1;50(8):1296-308. doi: 10.1021/bi1013613. Epub 2011 Feb 4.

PMID:
21192692
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The Tiam1 PDZ domain couples to Syndecan1 and promotes cell-matrix adhesion.

Shepherd TR, Klaus SM, Liu X, Ramaswamy S, DeMali KA, Fuentes EJ.

J Mol Biol. 2010 May 21;398(5):730-46. doi: 10.1016/j.jmb.2010.03.047. Epub 2010 Mar 31.

PMID:
20361982
[PubMed - indexed for MEDLINE]
4.

The structure of the Tiam1 PDZ domain/ phospho-syndecan1 complex reveals a ligand conformation that modulates protein dynamics.

Liu X, Shepherd TR, Murray AM, Xu Z, Fuentes EJ.

Structure. 2013 Mar 5;21(3):342-54. doi: 10.1016/j.str.2013.01.004. Epub 2013 Feb 7.

PMID:
23395182
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides.

Wiedemann U, Boisguerin P, Leben R, Leitner D, Krause G, Moelling K, Volkmer-Engert R, Oschkinat H.

J Mol Biol. 2004 Oct 22;343(3):703-18.

PMID:
15465056
[PubMed - indexed for MEDLINE]
6.

Interactions outside the boundaries of the canonical binding groove of a PDZ domain influence ligand binding.

Chi CN, Haq SR, Rinaldo S, Dogan J, Cutruzzolà F, Engström Å, Gianni S, Lundström P, Jemth P.

Biochemistry. 2012 Nov 6;51(44):8971-9. doi: 10.1021/bi300792h. Epub 2012 Oct 23.

PMID:
23046383
[PubMed - indexed for MEDLINE]
7.

An in silico analysis of the binding modes and binding affinities of small molecule modulators of PDZ-peptide interactions.

Tiwari G, Mohanty D.

PLoS One. 2013 Aug 8;8(8):e71340. doi: 10.1371/journal.pone.0071340. eCollection 2013.

PMID:
23951139
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Degenerate specificity of PDZ domains from RhoA-specific nucleotide exchange factors PDZRhoGEF and LARG.

Smietana K, Kasztura M, Paduch M, Derewenda U, Derewenda ZS, Otlewski J.

Acta Biochim Pol. 2008;55(2):269-80. Epub 2008 Jun 7.

PMID:
18542831
[PubMed - indexed for MEDLINE]
Free Article
9.

Energetic pathway sampling in a protein interaction domain.

Hultqvist G, Haq SR, Punekar AS, Chi CN, Engström Å, Bach A, Strømgaard K, Selmer M, Gianni S, Jemth P.

Structure. 2013 Jul 2;21(7):1193-1202.

PMID:
23810696
[PubMed - indexed for MEDLINE]
Free Article
10.

Sequence-specific long range networks in PSD-95/discs large/ZO-1 (PDZ) domains tune their binding selectivity.

Gianni S, Haq SR, Montemiglio LC, Jürgens MC, Engström Å, Chi CN, Brunori M, Jemth P.

J Biol Chem. 2011 Aug 5;286(31):27167-75. doi: 10.1074/jbc.M111.239541. Epub 2011 Jun 8.

PMID:
21653701
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Conformational change upon ligand binding and dynamics of the PDZ domain from leukemia-associated Rho guanine nucleotide exchange factor.

Liu J, Zhang J, Yang Y, Huang H, Shen W, Hu Q, Wang X, Wu J, Shi Y.

Protein Sci. 2008 Jun;17(6):1003-14. doi: 10.1110/ps.073416508. Epub 2008 Apr 14.

PMID:
18411422
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The structural flexibility of the shank1 PDZ domain is important for its binding to different ligands.

Lee JH, Park H, Park SJ, Kim HJ, Eom SH.

Biochem Biophys Res Commun. 2011 Apr 1;407(1):207-12. doi: 10.1016/j.bbrc.2011.02.141. Epub 2011 Mar 3.

PMID:
21376703
[PubMed - indexed for MEDLINE]
13.

Origins of PDZ domain ligand specificity. Structure determination and mutagenesis of the Erbin PDZ domain.

Skelton NJ, Koehler MF, Zobel K, Wong WL, Yeh S, Pisabarro MT, Yin JP, Lasky LA, Sidhu SS.

J Biol Chem. 2003 Feb 28;278(9):7645-54. Epub 2002 Nov 20.

PMID:
12446668
[PubMed - indexed for MEDLINE]
Free Article
14.

A thermodynamic ligand binding study of the third PDZ domain (PDZ3) from the mammalian neuronal protein PSD-95.

Saro D, Li T, Rupasinghe C, Paredes A, Caspers N, Spaller MR.

Biochemistry. 2007 May 29;46(21):6340-52. Epub 2007 May 3.

PMID:
17474715
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Energetics of peptide recognition by the second PDZ domain of human protein tyrosine phosphatase 1E.

Milev S, Bjelić S, Georgiev O, Jelesarov I.

Biochemistry. 2007 Jan 30;46(4):1064-78.

PMID:
17240990
[PubMed - indexed for MEDLINE]
16.

Simultaneous prediction of binding free energy and specificity for PDZ domain-peptide interactions.

Crivelli JJ, Lemmon G, Kaufmann KW, Meiler J.

J Comput Aided Mol Des. 2013 Dec;27(12):1051-65. doi: 10.1007/s10822-013-9696-9. Epub 2013 Dec 5.

PMID:
24305904
[PubMed - indexed for MEDLINE]
17.

A physical model for PDZ-domain/peptide interactions.

Kaufmann K, Shen N, Mizoue L, Meiler J.

J Mol Model. 2011 Feb;17(2):315-24. doi: 10.1007/s00894-010-0725-5. Epub 2010 May 12.

PMID:
20461427
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Molecular characterization and ligand binding specificity of the PDZ domain-containing protein GIPC3 from Schistosoma japonicum.

Mu Y, Huang H, Liu S, Cai P, Gao Y.

Parasit Vectors. 2012 Oct 10;5:227. doi: 10.1186/1756-3305-5-227.

PMID:
23050840
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Structural and functional analysis of the PDZ domains of human HtrA1 and HtrA3.

Runyon ST, Zhang Y, Appleton BA, Sazinsky SL, Wu P, Pan B, Wiesmann C, Skelton NJ, Sidhu SS.

Protein Sci. 2007 Nov;16(11):2454-71.

PMID:
17962403
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Convergent and divergent ligand specificity among PDZ domains of the LAP and zonula occludens (ZO) families.

Zhang Y, Yeh S, Appleton BA, Held HA, Kausalya PJ, Phua DC, Wong WL, Lasky LA, Wiesmann C, Hunziker W, Sidhu SS.

J Biol Chem. 2006 Aug 4;281(31):22299-311. Epub 2006 May 31.

PMID:
16737968
[PubMed - indexed for MEDLINE]
Free Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk