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Disruption of small RNA signaling caused by competition for Hfq.

Hussein R, Lim HN.

Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1110-5. doi: 10.1073/pnas.1010082108. Epub 2010 Dec 28.


Competition among Hfq-binding small RNAs in Escherichia coli.

Moon K, Gottesman S.

Mol Microbiol. 2011 Dec;82(6):1545-62. doi: 10.1111/j.1365-2958.2011.07907.x. Epub 2011 Nov 20.


Mutations in interaction surfaces differentially impact E. coli Hfq association with small RNAs and their mRNA targets.

Zhang A, Schu DJ, Tjaden BC, Storz G, Gottesman S.

J Mol Biol. 2013 Oct 9;425(19):3678-97. doi: 10.1016/j.jmb.2013.01.006. Epub 2013 Jan 11.


Essential requirements for robust signaling in Hfq dependent small RNA networks.

Adamson DN, Lim HN.

PLoS Comput Biol. 2011 Aug;7(8):e1002138. doi: 10.1371/journal.pcbi.1002138. Epub 2011 Aug 18.


Identifying Hfq-binding small RNA targets in Escherichia coli.

Zhang Y, Sun S, Wu T, Wang J, Liu C, Chen L, Zhu X, Zhao Y, Zhang Z, Shi B, Lu H, Chen R.

Biochem Biophys Res Commun. 2006 May 12;343(3):950-5. Epub 2006 Mar 20.


Central role for RNase YbeY in Hfq-dependent and Hfq-independent small-RNA regulation in bacteria.

Pandey SP, Winkler JA, Li H, Camacho DM, Collins JJ, Walker GC.

BMC Genomics. 2014 Feb 11;15:121. doi: 10.1186/1471-2164-15-121.


The stoichiometry of the Escherichia coli Hfq protein bound to RNA.

Updegrove TB, Correia JJ, Chen Y, Terry C, Wartell RM.

RNA. 2011 Mar;17(3):489-500. doi: 10.1261/rna.2452111. Epub 2011 Jan 4.


Cycling of RNAs on Hfq.

Wagner EG.

RNA Biol. 2013 Apr;10(4):619-26. doi: 10.4161/rna.24044. Epub 2013 Mar 6. Review.


Structure and RNA-binding properties of the bacterial LSm protein Hfq.

Sauer E.

RNA Biol. 2013 Apr;10(4):610-8. doi: 10.4161/rna.24201. Epub 2013 Mar 27. Review.


Structure of bacterial regulatory RNAs determines their performance in competition for the chaperone protein Hfq.

Małecka EM, Stróżecka J, Sobańska D, Olejniczak M.

Biochemistry. 2015 Feb 10;54(5):1157-70. doi: 10.1021/bi500741d. Epub 2015 Jan 26.


Acidic Residues in the Hfq Chaperone Increase the Selectivity of sRNA Binding and Annealing.

Panja S, Santiago-Frangos A, Schu DJ, Gottesman S, Woodson SA.

J Mol Biol. 2015 Nov 6;427(22):3491-500. doi: 10.1016/j.jmb.2015.07.010. Epub 2015 Jul 18.


Mechanism of RNA silencing by Hfq-binding small RNAs.

Aiba H.

Curr Opin Microbiol. 2007 Apr;10(2):134-9. Epub 2007 Mar 26. Review.


Positive regulation by small RNAs and the role of Hfq.

Soper T, Mandin P, Majdalani N, Gottesman S, Woodson SA.

Proc Natl Acad Sci U S A. 2010 May 25;107(21):9602-7. doi: 10.1073/pnas.1004435107. Epub 2010 May 10.


Paradoxical suppression of small RNA activity at high Hfq concentrations due to random-order binding.

Sagawa S, Shin JE, Hussein R, Lim HN.

Nucleic Acids Res. 2015 Sep 30;43(17):8502-15. doi: 10.1093/nar/gkv777. Epub 2015 Aug 10.


The influence of Escherichia coli Hfq mutations on RNA binding and sRNA•mRNA duplex formation in rpoS riboregulation.

Updegrove TB, Wartell RM.

Biochim Biophys Acta. 2011 Oct;1809(10):532-40. doi: 10.1016/j.bbagrm.2011.08.006. Epub 2011 Aug 22.


Role of the Escherichia coli Hfq protein in GcvB regulation of oppA and dppA mRNAs.

Pulvermacher SC, Stauffer LT, Stauffer GV.

Microbiology. 2009 Jan;155(Pt 1):115-23. doi: 10.1099/mic.0.023432-0.


Positional effects of AAN motifs in rpoS regulation by sRNAs and Hfq.

Peng Y, Soper TJ, Woodson SA.

J Mol Biol. 2014 Jan 23;426(2):275-85. doi: 10.1016/j.jmb.2013.08.026. Epub 2013 Sep 16.


Major role for mRNA binding and restructuring in sRNA recruitment by Hfq.

Soper TJ, Doxzen K, Woodson SA.

RNA. 2011 Aug;17(8):1544-50. doi: 10.1261/rna.2767211. Epub 2011 Jun 24.


Hfq binding changes the structure of Escherichia coli small noncoding RNAs OxyS and RprA, which are involved in the riboregulation of rpoS.

Henderson CA, Vincent HA, Casamento A, Stone CM, Phillips JO, Cary PD, Sobott F, Gowers DM, Taylor JE, Callaghan AJ.

RNA. 2013 Aug;19(8):1089-104. doi: 10.1261/rna.034595.112. Epub 2013 Jun 26.


Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti.

Torres-Quesada O, Reinkensmeier J, Schlüter JP, Robledo M, Peregrina A, Giegerich R, Toro N, Becker A, Jiménez-Zurdo JI.

RNA Biol. 2014;11(5):563-79. Epub 2014 Feb 26.

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