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Items: 1 to 20 of 100

1.

Rapid evolutionary innovation during an Archaean genetic expansion.

David LA, Alm EJ.

Nature. 2011 Jan 6;469(7328):93-6. doi: 10.1038/nature09649. Epub 2010 Dec 19.

PMID:
21170026
2.

Origins of major archaeal clades correspond to gene acquisitions from bacteria.

Nelson-Sathi S, Sousa FL, Roettger M, Lozada-Chávez N, Thiergart T, Janssen A, Bryant D, Landan G, Schönheit P, Siebers B, McInerney JO, Martin WF.

Nature. 2015 Jan 1;517(7532):77-80. doi: 10.1038/nature13805. Epub 2014 Oct 15.

3.

Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes.

Puigbò P, Lobkovsky AE, Kristensen DM, Wolf YI, Koonin EV.

BMC Biol. 2014 Aug 21;12:66. doi: 10.1186/s12915-014-0066-4.

4.

Streamlining and large ancestral genomes in Archaea inferred with a phylogenetic birth-and-death model.

Csurös M, Miklós I.

Mol Biol Evol. 2009 Sep;26(9):2087-95. doi: 10.1093/molbev/msp123. Epub 2009 Jun 30.

5.

Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer.

Wolf YI, Makarova KS, Yutin N, Koonin EV.

Biol Direct. 2012 Dec 14;7:46. doi: 10.1186/1745-6150-7-46.

6.

Genomes in flux: the evolution of archaeal and proteobacterial gene content.

Snel B, Bork P, Huynen MA.

Genome Res. 2002 Jan;12(1):17-25.

7.

Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ.

Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV.

Genome Biol. 2003;4(9):R55. Epub 2003 Aug 29.

8.

Metabolic bacterial genes and the construction of high-level composite lineages of life.

Méheust R, Lopez P, Bapteste E.

Trends Ecol Evol. 2015 Mar;30(3):127-9. doi: 10.1016/j.tree.2015.01.001. Epub 2015 Jan 16.

9.

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.

Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV.

Biol Direct. 2007 Nov 27;2:33.

10.

Genome trees constructed using five different approaches suggest new major bacterial clades.

Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

BMC Evol Biol. 2001 Oct 20;1:8.

11.
12.

Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea.

Raymann K, Forterre P, Brochier-Armanet C, Gribaldo S.

Genome Biol Evol. 2014 Jan;6(1):192-212. doi: 10.1093/gbe/evu004.

13.

Not so old Archaea - the antiquity of biogeochemical processes in the archaeal domain of life.

Blank CE.

Geobiology. 2009 Dec;7(5):495-514. doi: 10.1111/j.1472-4669.2009.00219.x. Epub 2009 Oct 15.

PMID:
19843187
14.

Phylogenomics of the archaeal flagellum: rare horizontal gene transfer in a unique motility structure.

Desmond E, Brochier-Armanet C, Gribaldo S.

BMC Evol Biol. 2007 Jul 2;7:106.

15.

The role of horizontal gene transfer in photosynthesis, oxygen production, and oxygen tolerance.

Raymond J.

Methods Mol Biol. 2009;532:323-38. doi: 10.1007/978-1-60327-853-9_19. Review.

PMID:
19271194
16.
17.

Evolution of gene fusions: horizontal transfer versus independent events.

Yanai I, Wolf YI, Koonin EV.

Genome Biol. 2002;3(5):research0024. Epub 2002 Apr 26.

19.

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.

Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, D'haeseleer P, Zemla A, Singer M, Lapidus A, Nolan M, Copeland A, Han C, Chen F, Cheng JF, Lucas S, Kerfeld C, Lang E, Gronow S, Chain P, Bruce D, Rubin EM, Kyrpides NC, Klenk HP, Eisen JA.

Nature. 2009 Dec 24;462(7276):1056-60. doi: 10.1038/nature08656.

20.
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