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Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA).

Sander JD, Dahlborg EJ, Goodwin MJ, Cade L, Zhang F, Cifuentes D, Curtin SJ, Blackburn JS, Thibodeau-Beganny S, Qi Y, Pierick CJ, Hoffman E, Maeder ML, Khayter C, Reyon D, Dobbs D, Langenau DM, Stupar RM, Giraldez AJ, Voytas DF, Peterson RT, Yeh JR, Joung JK.

Nat Methods. 2011 Jan;8(1):67-9. doi: 10.1038/nmeth.1542. Epub 2010 Dec 12.


Zinc-finger nucleases transition to the CoDA.

Segal DJ.

Nat Methods. 2011 Jan;8(1):53-5. doi: 10.1038/nmeth0111-53. No abstract available.


Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN).

Foley JE, Yeh JR, Maeder ML, Reyon D, Sander JD, Peterson RT, Joung JK.

PLoS One. 2009;4(2):e4348. doi: 10.1371/journal.pone.0004348. Epub 2009 Feb 9.


Improved somatic mutagenesis in zebrafish using transcription activator-like effector nucleases (TALENs).

Moore FE, Reyon D, Sander JD, Martinez SA, Blackburn JS, Khayter C, Ramirez CL, Joung JK, Langenau DM.

PLoS One. 2012;7(5):e37877. doi: 10.1371/journal.pone.0037877. Epub 2012 May 24.


Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures.

Doyon Y, Vo TD, Mendel MC, Greenberg SG, Wang J, Xia DF, Miller JC, Urnov FD, Gregory PD, Holmes MC.

Nat Methods. 2011 Jan;8(1):74-9. doi: 10.1038/nmeth.1539. Epub 2010 Dec 5.


ZFNGenome: a comprehensive resource for locating zinc finger nuclease target sites in model organisms.

Reyon D, Kirkpatrick JR, Sander JD, Zhang F, Voytas DF, Joung JK, Dobbs D, Coffman CR.

BMC Genomics. 2011 Jan 28;12:83. doi: 10.1186/1471-2164-12-83.


Synthetic zinc finger nuclease design and rapid assembly.

Osborn MJ, DeFeo AP, Blazar BR, Tolar J.

Hum Gene Ther. 2011 Sep;22(9):1155-65. doi: 10.1089/hum.2011.072. Epub 2011 Aug 10.


[Progress in zinc finger nuclease engineering for targeted genome modification].

Xiao A, Hu YY, Wang WY, Yang ZP, Wang ZX, Huang P, Tong XJ, Zhang B, Lin S.

Yi Chuan. 2011 Jul;33(7):665-83. Review. Chinese.


Targeted mutagenesis of duplicated genes in soybean with zinc-finger nucleases.

Curtin SJ, Zhang F, Sander JD, Haun WJ, Starker C, Baltes NJ, Reyon D, Dahlborg EJ, Goodwin MJ, Coffman AP, Dobbs D, Joung JK, Voytas DF, Stupar RM.

Plant Physiol. 2011 Jun;156(2):466-73. doi: 10.1104/pp.111.172981. Epub 2011 Apr 4.


Simultaneous screening and validation of effective zinc finger nucleases in yeast.

Wang L, Lin J, Zhang T, Xu K, Ren C, Zhang Z.

PLoS One. 2013 May 31;8(5):e64687. doi: 10.1371/journal.pone.0064687. Print 2013.


Zinc finger nuclease and homing endonuclease-mediated assembly of multigene plant transformation vectors.

Zeevi V, Liang Z, Arieli U, Tzfira T.

Plant Physiol. 2012 Jan;158(1):132-44. doi: 10.1104/pp.111.184374. Epub 2011 Nov 14.


In vitro assessment of zinc finger nuclease activity.

Cathomen T, Söllü C.

Methods Mol Biol. 2010;649:227-35. doi: 10.1007/978-1-60761-753-2_13.


Repeatable construction method for engineered zinc finger nuclease based on overlap extension PCR and TA-cloning.

Fujii W, Kano K, Sugiura K, Naito K.

PLoS One. 2013;8(3):e59801. doi: 10.1371/journal.pone.0059801. Epub 2013 Mar 25.


A toolbox and procedural notes for characterizing novel zinc finger nucleases for genome editing in plant cells.

Tovkach A, Zeevi V, Tzfira T.

Plant J. 2009 Feb;57(4):747-57. doi: 10.1111/j.1365-313X.2008.03718.x. Epub 2008 Nov 24.


Increasing frequencies of site-specific mutagenesis and gene targeting in Arabidopsis by manipulating DNA repair pathways.

Qi Y, Zhang Y, Zhang F, Baller JA, Cleland SC, Ryu Y, Starker CG, Voytas DF.

Genome Res. 2013 Mar;23(3):547-54. doi: 10.1101/gr.145557.112. Epub 2013 Jan 2.


Highly active zinc-finger nucleases by extended modular assembly.

Bhakta MS, Henry IM, Ousterout DG, Das KT, Lockwood SH, Meckler JF, Wallen MC, Zykovich A, Yu Y, Leo H, Xu L, Gersbach CA, Segal DJ.

Genome Res. 2013 Mar;23(3):530-8. doi: 10.1101/gr.143693.112. Epub 2012 Dec 5.


Adding fingers to an engineered zinc finger nuclease can reduce activity.

Shimizu Y, Şöllü C, Meckler JF, Adriaenssens A, Zykovich A, Cathomen T, Segal DJ.

Biochemistry. 2011 Jun 7;50(22):5033-41. doi: 10.1021/bi200393g. Epub 2011 May 11.


Targeted editing of goat genome with modular-assembly zinc finger nucleases based on activity prediction by computational molecular modeling.

Xiong K, Li S, Zhang H, Cui Y, Yu D, Li Y, Sun W, Fu Y, Teng Y, Liu Z, Zhou X, Xiao P, Li J, Liu H, Chen J.

Mol Biol Rep. 2013 Jul;40(7):4251-6. doi: 10.1007/s11033-013-2507-5. Epub 2013 May 5.


Zinc-finger nuclease based genome surgery: it's all about specificity.

Händel EM, Cathomen T.

Curr Gene Ther. 2011 Feb;11(1):28-37. Review.


Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly.

Kim HJ, Lee HJ, Kim H, Cho SW, Kim JS.

Genome Res. 2009 Jul;19(7):1279-88. doi: 10.1101/gr.089417.108. Epub 2009 May 21.

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