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Results: 1 to 20 of 135

1.

Site-directed mutants of 16S rRNA reveal important RNA domains for KsgA function and 30S subunit assembly.

Desai PM, Culver GM, Rife JP.

Biochemistry. 2011 Feb 8;50(5):854-63. doi: 10.1021/bi101005r. Epub 2011 Jan 11.

PMID:
21142019
[PubMed - indexed for MEDLINE]
2.

Structural insights into methyltransferase KsgA function in 30S ribosomal subunit biogenesis.

Boehringer D, O'Farrell HC, Rife JP, Ban N.

J Biol Chem. 2012 Mar 23;287(13):10453-9. doi: 10.1074/jbc.M111.318121. Epub 2012 Feb 3.

PMID:
22308031
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Mechanistic insight into the ribosome biogenesis functions of the ancient protein KsgA.

Connolly K, Rife JP, Culver G.

Mol Microbiol. 2008 Dec;70(5):1062-75. doi: 10.1111/j.1365-2958.2008.06485.x.

PMID:
18990185
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Modification of 16S ribosomal RNA by the KsgA methyltransferase restructures the 30S subunit to optimize ribosome function.

Demirci H, Murphy F 4th, Belardinelli R, Kelley AC, Ramakrishnan V, Gregory ST, Dahlberg AE, Jogl G.

RNA. 2010 Dec;16(12):2319-24. doi: 10.1261/rna.2357210. Epub 2010 Oct 20.

PMID:
20962038
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Differential assembly of 16S rRNA domains during 30S subunit formation.

Xu Z, Culver GM.

RNA. 2010 Oct;16(10):1990-2001. doi: 10.1261/rna.2246710. Epub 2010 Aug 24.

PMID:
20736336
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Molecular recognition and modification of the 30S ribosome by the aminoglycoside-resistance methyltransferase NpmA.

Dunkle JA, Vinal K, Desai PM, Zelinskaya N, Savic M, West DM, Conn GL, Dunham CM.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6275-80. doi: 10.1073/pnas.1402789111. Epub 2014 Apr 9.

PMID:
24717845
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Ribosome biogenesis; the KsgA protein throws a methyl-mediated switch in ribosome assembly.

Mangat CS, Brown ED.

Mol Microbiol. 2008 Dec;70(5):1051-3.

PMID:
19006815
[PubMed - indexed for MEDLINE]
9.

The aminoglycoside resistance methyltransferases from the ArmA/Rmt family operate late in the 30S ribosomal biogenesis pathway.

Zarubica T, Baker MR, Wright HT, Rife JP.

RNA. 2011 Feb;17(2):346-55. doi: 10.1261/rna.2314311. Epub 2010 Dec 22.

PMID:
21177880
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Control of substrate specificity by a single active site residue of the KsgA methyltransferase.

O'Farrell HC, Musayev FN, Scarsdale JN, Rife JP.

Biochemistry. 2012 Jan 10;51(1):466-74. doi: 10.1021/bi201539j. Epub 2011 Dec 22.

PMID:
22142337
[PubMed - indexed for MEDLINE]
11.

The aminoglycoside resistance methyltransferase Sgm impedes RsmF methylation at an adjacent rRNA nucleotide in the ribosomal A site.

Cubrilo S, Babić F, Douthwaite S, Maravić Vlahovicek G.

RNA. 2009 Aug;15(8):1492-7. doi: 10.1261/rna.1618809. Epub 2009 Jun 9.

PMID:
19509304
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Properties of small rRNA methyltransferase RsmD: mutational and kinetic study.

Sergeeva OV, Prokhorova IV, Ordabaev Y, Tsvetkov PO, Sergiev PV, Bogdanov AA, Makarov AA, Dontsova OA.

RNA. 2012 Jun;18(6):1178-85. doi: 10.1261/rna.032763.112. Epub 2012 Apr 25.

PMID:
22535590
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The PRC-barrel domain of the ribosome maturation protein RimM mediates binding to ribosomal protein S19 in the 30S ribosomal subunits.

Lövgren JM, Bylund GO, Srivastava MK, Lundberg LA, Persson OP, Wingsle G, Wikström PM.

RNA. 2004 Nov;10(11):1798-812.

PMID:
15496525
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Substrate specificity and properties of the Escherichia coli 16S rRNA methyltransferase, RsmE.

Basturea GN, Deutscher MP.

RNA. 2007 Nov;13(11):1969-76. Epub 2007 Sep 13.

PMID:
17872509
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Site-specific mutation of the conserved m6(2)A m6(2)A residues of E. coli 16S ribosomal RNA. Effects on ribosome function and activity of the ksgA methyltransferase.

Cunningham PR, Weitzmann CJ, Nurse K, Masurel R, Van Knippenberg PH, Ofengand J.

Biochim Biophys Acta. 1990 Aug 27;1050(1-3):18-26.

PMID:
2207142
[PubMed - indexed for MEDLINE]
16.

Insights into the catalytic mechanism of 16S rRNA methyltransferase RsmE (m³U1498) from crystal and solution structures.

Zhang H, Wan H, Gao ZQ, Wei Y, Wang WJ, Liu GF, Shtykova EV, Xu JH, Dong YH.

J Mol Biol. 2012 Nov 2;423(4):576-89. doi: 10.1016/j.jmb.2012.08.016. Epub 2012 Aug 25.

PMID:
22925577
[PubMed - indexed for MEDLINE]
17.

Structural basis for the methylation of A1408 in 16S rRNA by a panaminoglycoside resistance methyltransferase NpmA from a clinical isolate and analysis of the NpmA interactions with the 30S ribosomal subunit.

Husain N, Obranic S, Koscinski L, Seetharaman J, Babic F, Bujnicki JM, Maravic-Vlahovicek G, Sivaraman J.

Nucleic Acids Res. 2011 Mar;39(5):1903-18. doi: 10.1093/nar/gkq1033. Epub 2010 Nov 9.

PMID:
21062819
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

YebU is a m5C methyltransferase specific for 16 S rRNA nucleotide 1407.

Andersen NM, Douthwaite S.

J Mol Biol. 2006 Jun 9;359(3):777-86. Epub 2006 Apr 21.

PMID:
16678201
[PubMed - indexed for MEDLINE]
19.

Novel plasmid-mediated 16S rRNA m1A1408 methyltransferase, NpmA, found in a clinically isolated Escherichia coli strain resistant to structurally diverse aminoglycosides.

Wachino J, Shibayama K, Kurokawa H, Kimura K, Yamane K, Suzuki S, Shibata N, Ike Y, Arakawa Y.

Antimicrob Agents Chemother. 2007 Dec;51(12):4401-9. Epub 2007 Sep 17.

PMID:
17875999
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Appropriate maturation and folding of 16S rRNA during 30S subunit biogenesis are critical for translational fidelity.

Roy-Chaudhuri B, Kirthi N, Culver GM.

Proc Natl Acad Sci U S A. 2010 Mar 9;107(10):4567-72. doi: 10.1073/pnas.0912305107. Epub 2010 Feb 22.

PMID:
20176963
[PubMed - indexed for MEDLINE]
Free PMC Article

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