Similar articles for PMID: 21117706

Year	Number of Results
2005	1
2006	3
2007	3
2008	5
2009	8
2010	10
2011	10
2012	18
2013	13
2014	4
2015	5
2016	6
2017	12
2018	4
2019	5
2020	5
2021	3
2022	2
2023	1
2024	0

1

Modeling contaminants in AP-MS/MS experiments.

Lavallée-Adam M, Cloutier P, Coulombe B, Blanchette M. Lavallée-Adam M, et al. J Proteome Res. 2011 Feb 4;10(2):886-95. doi: 10.1021/pr100795z. Epub 2010 Dec 31. J Proteome Res. 2011. PMID: 21117706 Free PMC article.

2

ROCS: a reproducibility index and confidence score for interaction proteomics studies.

Dazard JE, Saha S, Ewing RM. Dazard JE, et al. BMC Bioinformatics. 2012 Jun 8;13:128. doi: 10.1186/1471-2105-13-128. BMC Bioinformatics. 2012. PMID: 22682516 Free PMC article.

3

Identification of Protein Complexes from Tandem Affinity Purification/Mass Spectrometry Data via Biased Random Walk.

Cai B, Wang H, Zheng H, Wang H. Cai B, et al. IEEE/ACM Trans Comput Biol Bioinform. 2015 Mar-Apr;12(2):455-66. doi: 10.1109/TCBB.2014.2352616. IEEE/ACM Trans Comput Biol Bioinform. 2015. PMID: 26357231

4

Mapping Protein-Protein Interactions Using Affinity Purification and Mass Spectrometry.

Lee CM, Adamchek C, Feke A, Nusinow DA, Gendron JM. Lee CM, et al. Methods Mol Biol. 2017;1610:231-249. doi: 10.1007/978-1-4939-7003-2_15. Methods Mol Biol. 2017. PMID: 28439867

5

Computational framework for analysis of prey-prey associations in interaction proteomics identifies novel human protein-protein interactions and networks.

Saha S, Dazard JE, Xu H, Ewing RM. Saha S, et al. J Proteome Res. 2012 Sep 7;11(9):4476-87. doi: 10.1021/pr300227y. Epub 2012 Aug 21. J Proteome Res. 2012. PMID: 22845868 Free PMC article.

6

Quantitative Tagless Copurification: A Method to Validate and Identify Protein-Protein Interactions.

Shatsky M, Dong M, Liu H, Yang LL, Choi M, Singer ME, Geller JT, Fisher SJ, Hall SC, Hazen TC, Brenner SE, Butland G, Jin J, Witkowska HE, Chandonia JM, Biggin MD. Shatsky M, et al. Mol Cell Proteomics. 2016 Jun;15(6):2186-202. doi: 10.1074/mcp.M115.057117. Epub 2016 Apr 20. Mol Cell Proteomics. 2016. PMID: 27099342 Free PMC article.

7

Analyzing protein-protein interactions by quantitative mass spectrometry.

Paul FE, Hosp F, Selbach M. Paul FE, et al. Methods. 2011 Aug;54(4):387-95. doi: 10.1016/j.ymeth.2011.03.001. Epub 2011 Mar 5. Methods. 2011. PMID: 21382495 Review.

8

Computational detection of protein complexes in AP-MS experiments.

Choi H. Choi H. Proteomics. 2012 May;12(10):1663-8. doi: 10.1002/pmic.201100508. Proteomics. 2012. PMID: 22711593 Review.

9

A two-step framework for inferring direct protein-protein interaction network from AP-MS data.

Tian B, Zhao C, Gu F, He Z. Tian B, et al. BMC Syst Biol. 2017 Sep 21;11(Suppl 4):82. doi: 10.1186/s12918-017-0452-y. BMC Syst Biol. 2017. PMID: 28950876 Free PMC article.

10

The CRAPome: a contaminant repository for affinity purification-mass spectrometry data.

Mellacheruvu D, Wright Z, Couzens AL, Lambert JP, St-Denis NA, Li T, Miteva YV, Hauri S, Sardiu ME, Low TY, Halim VA, Bagshaw RD, Hubner NC, Al-Hakim A, Bouchard A, Faubert D, Fermin D, Dunham WH, Goudreault M, Lin ZY, Badillo BG, Pawson T, Durocher D, Coulombe B, Aebersold R, Superti-Furga G, Colinge J, Heck AJ, Choi H, Gstaiger M, Mohammed S, Cristea IM, Bennett KL, Washburn MP, Raught B, Ewing RM, Gingras AC, Nesvizhskii AI. Mellacheruvu D, et al. Nat Methods. 2013 Aug;10(8):730-6. doi: 10.1038/nmeth.2557. Epub 2013 Jul 7. Nat Methods. 2013. PMID: 23921808 Free PMC article.

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