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Results: 1 to 20 of 140

1.

Validation and characterization of DNA microarray gene expression data distribution and associated moments.

Thomas R, de la Torre L, Chang X, Mehrotra S.

BMC Bioinformatics. 2010 Nov 24;11:576. doi: 10.1186/1471-2105-11-576.

PMID:
21092329
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements.

Carter SL, Eklund AC, Mecham BH, Kohane IS, Szallasi Z.

BMC Bioinformatics. 2005 Apr 25;6:107.

PMID:
15850491
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypes.

Warnat P, Eils R, Brors B.

BMC Bioinformatics. 2005 Nov 4;6:265.

PMID:
16271137
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.

PMID:
16551369
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Post hoc pattern matching: assigning significance to statistically defined expression patterns in single channel microarray data.

Hulshizer R, Blalock EM.

BMC Bioinformatics. 2007 Jul 5;8:240.

PMID:
17615071
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Evaluation of inter-laboratory and cross-platform concordance of DNA microarrays through discriminating genes and classifier transferability.

Mao S, Wang C, Dong G.

J Bioinform Comput Biol. 2009 Feb;7(1):157-73.

PMID:
19226665
[PubMed - indexed for MEDLINE]
7.

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID:
15117752
[PubMed - indexed for MEDLINE]
Free Article
8.

Development and evaluation of new mask protocols for gene expression profiling in humans and chimpanzees.

Toleno DM, Renaud G, Wolfsberg TG, Islam M, Wildman DE, Siegmund KD, Hacia JG.

BMC Bioinformatics. 2009 Mar 5;10:77. doi: 10.1186/1471-2105-10-77.

PMID:
19265541
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

J Neurosci Methods. 2006 Apr 15;152(1-2):179-89. Epub 2005 Oct 25.

PMID:
16253343
[PubMed - indexed for MEDLINE]
10.

Gene Vector Analysis (Geneva): a unified method to detect differentially-regulated gene sets and similar microarray experiments.

Tanner SW, Agarwal P.

BMC Bioinformatics. 2008 Aug 22;9:348. doi: 10.1186/1471-2105-9-348.

PMID:
18721468
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Evaluation of the similarity of gene expression data estimated with SAGE and Affymetrix GeneChips.

van Ruissen F, Ruijter JM, Schaaf GJ, Asgharnegad L, Zwijnenburg DA, Kool M, Baas F.

BMC Genomics. 2005 Jun 14;6:91.

PMID:
15955238
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A robust method for estimating gene expression states using Affymetrix microarray probe level data.

Ohtaki M, Otani K, Hiyama K, Kamei N, Satoh K, Hiyama E.

BMC Bioinformatics. 2010 Apr 12;11:183. doi: 10.1186/1471-2105-11-183.

PMID:
20380745
[PubMed - indexed for MEDLINE]
Free PMC Article
13.
14.

The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies.

Verhaak RG, Staal FJ, Valk PJ, Lowenberg B, Reinders MJ, de Ridder D.

BMC Bioinformatics. 2006 Mar 2;7:105.

PMID:
16512908
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Exploring matrix factorization techniques for significant genes identification of Alzheimer's disease microarray gene expression data.

Kong W, Mou X, Hu X.

BMC Bioinformatics. 2011;12 Suppl 5:S7. doi: 10.1186/1471-2105-12-S5-S7. Epub 2011 Jul 27.

PMID:
21989140
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Robust multi-tissue gene panel for cancer detection.

Irgon J, Huang CC, Zhang Y, Talantov D, Bhanot G, Szalma S.

BMC Cancer. 2010 Jun 22;10:319. doi: 10.1186/1471-2407-10-319.

PMID:
20569444
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Novel and simple transformation algorithm for combining microarray data sets.

Kim KY, Ki DH, Jeong HJ, Jeung HC, Chung HC, Rha SY.

BMC Bioinformatics. 2007 Jun 25;8:218.

PMID:
17588268
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

High-throughput processing and normalization of one-color microarrays for transcriptional meta-analyses.

Dozmorov MG, Wren JD.

BMC Bioinformatics. 2011 Oct 18;12 Suppl 10:S2. doi: 10.1186/1471-2105-12-S10-S2.

PMID:
22166002
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms.

Barnes M, Freudenberg J, Thompson S, Aronow B, Pavlidis P.

Nucleic Acids Res. 2005 Oct 19;33(18):5914-23. Print 2005.

PMID:
16237126
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Combining gene expression data from different generations of oligonucleotide arrays.

Hwang KB, Kong SW, Greenberg SA, Park PJ.

BMC Bioinformatics. 2004 Oct 25;5:159.

PMID:
15504239
[PubMed - indexed for MEDLINE]
Free PMC Article

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