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Similar articles for PubMed (Select 21082430)

1.

Structure-guided rule-based annotation of protein functional sites in UniProt knowledgebase.

Vasudevan S, Vinayaka CR, Natale DA, Huang H, Kahsay RY, Wu CH.

Methods Mol Biol. 2011;694:91-105. doi: 10.1007/978-1-60761-977-2_7.

PMID:
21082430
2.

Annotating single amino acid polymorphisms in the UniProt/Swiss-Prot knowledgebase.

Yip YL, Famiglietti M, Gos A, Duek PD, David FP, Gateau A, Bairoch A.

Hum Mutat. 2008 Mar;29(3):361-6. doi: 10.1002/humu.20671.

PMID:
18175334
3.

UniProtKB/Swiss-Prot.

Boutet E, Lieberherr D, Tognolli M, Schneider M, Bairoch A.

Methods Mol Biol. 2007;406:89-112.

PMID:
18287689
4.

Protein family classification and functional annotation.

Wu CH, Huang H, Yeh LS, Barker WC.

Comput Biol Chem. 2003 Feb;27(1):37-47. Review.

PMID:
12798038
5.

PROSITE, a protein domain database for functional characterization and annotation.

Sigrist CJ, Cerutti L, de Castro E, Langendijk-Genevaux PS, Bulliard V, Bairoch A, Hulo N.

Nucleic Acids Res. 2010 Jan;38(Database issue):D161-6. doi: 10.1093/nar/gkp885. Epub 2009 Oct 25.

6.

The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools.

Schneider M, Tognolli M, Bairoch A.

Plant Physiol Biochem. 2004 Dec;42(12):1013-21. Epub 2004 Dec 15. Review.

PMID:
15707838
7.

UniProt: the Universal Protein knowledgebase.

Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, Magrane M, Martin MJ, Natale DA, O'Donovan C, Redaschi N, Yeh LS.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D115-9.

8.

ProRule: a new database containing functional and structural information on PROSITE profiles.

Sigrist CJ, De Castro E, Langendijk-Genevaux PS, Le Saux V, Bairoch A, Hulo N.

Bioinformatics. 2005 Nov 1;21(21):4060-6. Epub 2005 Aug 9.

9.

Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb.

Nagel K, Jimeno-Yepes A, Rebholz-Schuhmann D.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S4. doi: 10.1186/1471-2105-10-S8-S4.

10.

Plant protein annotation in the UniProt Knowledgebase.

Schneider M, Bairoch A, Wu CH, Apweiler R.

Plant Physiol. 2005 May;138(1):59-66.

11.

Prediction of deleterious functional effects of amino acid mutations using a library of structure-based function descriptors.

Herrgard S, Cammer SA, Hoffman BT, Knutson S, Gallina M, Speir JA, Fetrow JS, Baxter SM.

Proteins. 2003 Dec 1;53(4):806-16.

PMID:
14635123
12.

Protein meta-functional signatures from combining sequence, structure, evolution, and amino acid property information.

Wang K, Horst JA, Cheng G, Nickle DC, Samudrala R.

PLoS Comput Biol. 2008 Sep 26;4(9):e1000181. doi: 10.1371/journal.pcbi.1000181.

13.
14.

Prediction of enzyme function based on 3D templates of evolutionarily important amino acids.

Kristensen DM, Ward RM, Lisewski AM, Erdin S, Chen BY, Fofanov VY, Kimmel M, Kavraki LE, Lichtarge O.

BMC Bioinformatics. 2008 Jan 11;9:17. doi: 10.1186/1471-2105-9-17.

15.

ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins.

de Castro E, Sigrist CJ, Gattiker A, Bulliard V, Langendijk-Genevaux PS, Gasteiger E, Bairoch A, Hulo N.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W362-5.

16.

Protein variety and functional diversity: Swiss-Prot annotation in its biological context.

Boeckmann B, Blatter MC, Famiglietti L, Hinz U, Lane L, Roechert B, Bairoch A.

C R Biol. 2005 Oct-Nov;328(10-11):882-99. Epub 2005 Jul 28. Review.

PMID:
16286078
18.

Mining sequence annotation databanks for association patterns.

Artamonova II, Frishman G, Gelfand MS, Frishman D.

Bioinformatics. 2005 Nov 1;21 Suppl 3:iii49-57.

19.

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.

20.

Retrieving mutation-specific information for human proteins in UniProt/Swiss-Prot Knowledgebase.

Yip YL, Lachenal N, Pillet V, Veuthey AL.

J Bioinform Comput Biol. 2007 Dec;5(6):1215-31.

PMID:
18172926
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