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Items: 1 to 20 of 165

1.

PhEVER: a database for the global exploration of virus-host evolutionary relationships.

Palmeira L, Penel S, Lotteau V, Rabourdin-Combe C, Gautier C.

Nucleic Acids Res. 2011 Jan;39(Database issue):D569-75. doi: 10.1093/nar/gkq1013. Epub 2010 Nov 16.

2.

Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research.

Chang S, Zhang J, Liao X, Zhu X, Wang D, Zhu J, Feng T, Zhu B, Gao GF, Wang J, Yang H, Yu J, Wang J.

Nucleic Acids Res. 2007 Jan;35(Database issue):D376-80. Epub 2006 Oct 25.

3.

Viral proteins acquired from a host converge to simplified domain architectures.

Rappoport N, Linial M.

PLoS Comput Biol. 2012 Feb;8(2):e1002364. doi: 10.1371/journal.pcbi.1002364. Epub 2012 Feb 2.

4.

Databases of homologous gene families for comparative genomics.

Penel S, Arigon AM, Dufayard JF, Sertier AS, Daubin V, Duret L, Gouy M, Perrière G.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S3. doi: 10.1186/1471-2105-10-S6-S3.

5.

Widespread horizontal gene transfer from circular single-stranded DNA viruses to eukaryotic genomes.

Liu H, Fu Y, Li B, Yu X, Xie J, Cheng J, Ghabrial SA, Li G, Yi X, Jiang D.

BMC Evol Biol. 2011 Sep 26;11:276. doi: 10.1186/1471-2148-11-276.

6.

Polymorphix: a sequence polymorphism database.

Bazin E, Duret L, Penel S, Galtier N.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D481-4.

7.

VirGen: a comprehensive viral genome resource.

Kulkarni-Kale U, Bhosle S, Manjari GS, Kolaskar AS.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D289-92.

8.

Remote access to ACNUC nucleotide and protein sequence databases at PBIL.

Gouy M, Delmotte S.

Biochimie. 2008 Apr;90(4):555-62. Epub 2007 Jul 15.

PMID:
17825976
9.

Curation of viral genomes: challenges, applications and the way forward.

Kulkarni-Kale U, Bhosle SG, Manjari GS, Joshi M, Bansode S, Kolaskar AS.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S12.

10.

Discovery of novel dsRNA viral sequences by in silico cloning and implications for viral diversity, host range and evolution.

Liu H, Fu Y, Xie J, Cheng J, Ghabrial SA, Li G, Yi X, Jiang D.

PLoS One. 2012;7(7):e42147. doi: 10.1371/journal.pone.0042147. Epub 2012 Jul 27.

11.

Are viruses a source of new protein folds for organisms? - Virosphere structure space and evolution.

Abroi A, Gough J.

Bioessays. 2011 Aug;33(8):626-35. doi: 10.1002/bies.201000126. Epub 2011 Jun 1.

PMID:
21633962
12.

Evolution of viral DNA-dependent RNA polymerases.

Sonntag KC, Darai G.

Virus Genes. 1995;11(2-3):271-84. Review.

PMID:
8828152
13.

VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks.

Navratil V, de Chassey B, Meyniel L, Delmotte S, Gautier C, André P, Lotteau V, Rabourdin-Combe C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D661-8. doi: 10.1093/nar/gkn794. Epub 2008 Nov 4.

14.

Widespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomes.

Liu H, Fu Y, Jiang D, Li G, Xie J, Cheng J, Peng Y, Ghabrial SA, Yi X.

J Virol. 2010 Nov;84(22):11876-87. doi: 10.1128/JVI.00955-10. Epub 2010 Sep 1.

15.

Complete genome viral phylogenies suggests the concerted evolution of regulatory cores and accessory satellites.

de Andrade Zanotto PM, Krakauer DC.

PLoS One. 2008;3(10):e3500. doi: 10.1371/journal.pone.0003500. Epub 2008 Oct 22.

16.

Identification and investigation of ORFans in the viral world.

Yin Y, Fischer D.

BMC Genomics. 2008 Jan 19;9:24. doi: 10.1186/1471-2164-9-24.

17.

[Genome virology: the novel interaction of RNA viruses and host genomes].

Tomonaga K.

Uirusu. 2012 Jun;62(1):47-55. Review. Japanese.

18.

FluGenome: a web tool for genotyping influenza A virus.

Lu G, Rowley T, Garten R, Donis RO.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W275-9. Epub 2007 May 30.

19.

Genome trees constructed using five different approaches suggest new major bacterial clades.

Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

BMC Evol Biol. 2001 Oct 20;1:8.

20.

[The great virus comeback].

Forterre P.

Biol Aujourdhui. 2013;207(3):153-68. doi: 10.1051/jbio/2013018. Epub 2013 Dec 13. Review. French.

PMID:
24330969
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