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Similar articles for PubMed (Select 21058662)

1.

Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles.

Callister SJ, Wilkins MJ, Nicora CD, Williams KH, Banfield JF, VerBerkmoes NC, Hettich RL, N'Guessan L, Mouser PJ, Elifantz H, Smith RD, Lovley DR, Lipton MS, Long PE.

Environ Sci Technol. 2010 Dec 1;44(23):8897-903. doi: 10.1021/es101029f. Epub 2010 Nov 8.

PMID:
21058662
2.

Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction.

Zhang P, Wu WM, Van Nostrand JD, Deng Y, He Z, Gihring T, Zhang G, Schadt CW, Watson D, Jardine P, Criddle CS, Brooks S, Marsh TL, Tiedje JM, Arkin AP, Zhou J.

Appl Environ Microbiol. 2015 Jun 15;81(12):4164-72. doi: 10.1128/AEM.00043-15. Epub 2015 Apr 10.

PMID:
25862231
3.

Sequential isolation of metabolites, RNA, DNA, and proteins from the same unique sample.

Roume H, Heintz-Buschart A, Muller EE, Wilmes P.

Methods Enzymol. 2013;531:219-36. doi: 10.1016/B978-0-12-407863-5.00011-3.

PMID:
24060123
4.

High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment.

Handley KM, Wrighton KC, Piceno YM, Andersen GL, DeSantis TZ, Williams KH, Wilkins MJ, N'Guessan AL, Peacock A, Bargar J, Long PE, Banfield JF.

FEMS Microbiol Ecol. 2012 Jul;81(1):188-204. doi: 10.1111/j.1574-6941.2012.01363.x. Epub 2012 Apr 13.

5.

N-gram analysis of 970 microbial organisms reveals presence of biological language models.

Osmanbeyoglu HU, Ganapathiraju MK.

BMC Bioinformatics. 2011 Jan 10;12:12. doi: 10.1186/1471-2105-12-12.

6.

Genomic and functional adaptation in surface ocean planktonic prokaryotes.

Yooseph S, Nealson KH, Rusch DB, McCrow JP, Dupont CL, Kim M, Johnson J, Montgomery R, Ferriera S, Beeson K, Williamson SJ, Tovchigrechko A, Allen AE, Zeigler LA, Sutton G, Eisenstadt E, Rogers YH, Friedman R, Frazier M, Venter JC.

Nature. 2010 Nov 4;468(7320):60-6. doi: 10.1038/nature09530.

PMID:
21048761
7.

Comparative proteomics and activity of a green sulfur bacterium through the water column of Lake Cadagno, Switzerland.

Habicht KS, Miller M, Cox RP, Frigaard NU, Tonolla M, Peduzzi S, Falkenby LG, Andersen JS.

Environ Microbiol. 2011 Jan;13(1):203-15. doi: 10.1111/j.1462-2920.2010.02321.x. Epub 2010 Aug 20.

PMID:
20731699
8.

Reactive iron barriers: a niche enabling microbial dehalorespiration of 1,2-dichloroethane.

Zemb O, Lee M, Low A, Manefield M.

Appl Microbiol Biotechnol. 2010 Sep;88(1):319-25. doi: 10.1007/s00253-010-2740-y. Epub 2010 Jul 7.

PMID:
20607230
9.

Uranium 238U/235U isotope ratios as indicators of reduction: results from an in situ biostimulation experiment at Rifle, Colorado, U.S.A.

Bopp CJ 4th, Lundstrom CC, Johnson TM, Sanford RA, Long PE, Williams KH.

Environ Sci Technol. 2010 Aug 1;44(15):5927-33. doi: 10.1021/es100643v.

PMID:
20597538
10.

Ecoenzymatic stoichiometry in relation to productivity for freshwater biofilm and plankton communities.

Sinsabaugh RL, Van Horn DJ, Shah JJ, Findlay S.

Microb Ecol. 2010 Nov;60(4):885-93. doi: 10.1007/s00248-010-9696-4. Epub 2010 Jun 17.

PMID:
20556375
11.

Microbial reduction of uranium under iron- and sulfate-reducing conditions: Effect of amended goethite on microbial community composition and dynamics.

Moon HS, McGuinness L, Kukkadapu RK, Peacock AD, Komlos J, Kerkhof LJ, Long PE, Jaffé PR.

Water Res. 2010 Jul;44(14):4015-28. doi: 10.1016/j.watres.2010.05.003. Epub 2010 May 26.

PMID:
20541787
12.

Ecological distribution and population physiology defined by proteomics in a natural microbial community.

Mueller RS, Denef VJ, Kalnejais LH, Suttle KB, Thomas BC, Wilmes P, Smith RL, Nordstrom DK, McCleskey RB, Shah MB, Verberkmoes NC, Hettich RL, Banfield JF.

Mol Syst Biol. 2010 Jun 8;6:374. doi: 10.1038/msb.2010.30.

13.

Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation.

Xu M, Wu WM, Wu L, He Z, Van Nostrand JD, Deng Y, Luo J, Carley J, Ginder-Vogel M, Gentry TJ, Gu B, Watson D, Jardine PM, Marsh TL, Tiedje JM, Hazen T, Criddle CS, Zhou J.

ISME J. 2010 Aug;4(8):1060-70. doi: 10.1038/ismej.2010.31. Epub 2010 Mar 18.

PMID:
20237512
14.

Effects of physical and geochemical heterogeneities on mineral transformation and biomass accumulation during biostimulation experiments at Rifle, Colorado.

Li L, Steefel CI, Kowalsky MB, Englert A, Hubbard SS.

J Contam Hydrol. 2010 Mar 1;112(1-4):45-63. doi: 10.1016/j.jconhyd.2009.10.006. Epub 2009 Oct 31.

PMID:
20036028
15.

Substrate utilization profiles of bacterial strains in plankton from the River Warnow, a humic and eutrophic river in north Germany.

Freese HM, Eggert A, Garland JL, Schumann R.

Microb Ecol. 2010 Jan;59(1):59-75. doi: 10.1007/s00248-009-9608-7.

PMID:
19936822
16.

Unique ecophysiology among U(VI)-reducing bacteria as revealed by evaluation of oxygen metabolism in Anaeromyxobacter dehalogenans strain 2CP-C.

Thomas SH, Sanford RA, Amos BK, Leigh MB, Cardenas E, Löffler FE.

Appl Environ Microbiol. 2010 Jan;76(1):176-83. doi: 10.1128/AEM.01854-09. Epub 2009 Nov 6.

17.

Prokaryotic community structure and sulfate reducer activity in water from high-temperature oil reservoirs with and without nitrate treatment.

Gittel A, Sørensen KB, Skovhus TL, Ingvorsen K, Schramm A.

Appl Environ Microbiol. 2009 Nov;75(22):7086-96. doi: 10.1128/AEM.01123-09. Epub 2009 Oct 2.

18.

The vertical distribution of bacterial and archaeal communities in the water and sediment of Lake Taihu.

Ye W, Liu X, Lin S, Tan J, Pan J, Li D, Yang H.

FEMS Microbiol Ecol. 2009 Nov;70(2):107-20. doi: 10.1111/j.1574-6941.2009.00761.x. Epub 2009 Aug 7.

19.

Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation.

Wilkins MJ, Verberkmoes NC, Williams KH, Callister SJ, Mouser PJ, Elifantz H, N'guessan AL, Thomas BC, Nicora CD, Shah MB, Abraham P, Lipton MS, Lovley DR, Hettich RL, Long PE, Banfield JF.

Appl Environ Microbiol. 2009 Oct;75(20):6591-9. doi: 10.1128/AEM.01064-09. Epub 2009 Aug 28.

20.

Bacterial diversity and community structure of a sub-surface aquifer exposed to realistic low herbicide concentrations.

de Lipthay JR, Johnsen K, Albrechtsen HJ, Rosenberg P, Aamand J.

FEMS Microbiol Ecol. 2004 Jul 1;49(1):59-69. doi: 10.1016/j.femsec.2004.02.007.

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