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Items: 1 to 20 of 73

1.

A Clustering Optimization Strategy for Molecular Taxonomy Applied to Planktonic Foraminifera SSU rDNA.

Göker M, Grimm GW, Auch AF, Aurahs R, Kučera M.

Evol Bioinform Online. 2010 Sep 9;6:97-112.

2.

Molecular taxonomy of phytopathogenic fungi: a case study in Peronospora.

Göker M, García-Blázquez G, Voglmayr H, Tellería MT, Martín MP.

PLoS One. 2009 Jul 29;4(7):e6319. doi: 10.1371/journal.pone.0006319.

3.

SSU rDNA divergence in planktonic foraminifera: molecular taxonomy and biogeographic implications.

André A, Quillévéré F, Morard R, Ujiié Y, Escarguel G, de Vargas C, de Garidel-Thoron T, Douady CJ.

PLoS One. 2014 Aug 13;9(8):e104641. doi: 10.1371/journal.pone.0104641. eCollection 2014.

4.

Using the Multiple Analysis Approach to Reconstruct Phylogenetic Relationships among Planktonic Foraminifera from Highly Divergent and Length-polymorphic SSU rDNA Sequences.

Aurahs R, Göker M, Grimm GW, Hemleben V, Hemleben C, Schiebel R, Kucera M.

Bioinform Biol Insights. 2009 Nov 11;3:155-77.

5.

Phylogeny and rates of molecular evolution of planktonic foraminifera: SSU rDNA sequences compared to the fossil record.

de Vargas C, Zaninetti L, Hilbrecht H, Pawlowski J.

J Mol Evol. 1997 Sep;45(3):285-94.

PMID:
9302323
6.

Eukaryotic diversity and phylogeny using small- and large-subunit ribosomal RNA genes from environmental samples.

Marande W, López-García P, Moreira D.

Environ Microbiol. 2009 Dec;11(12):3179-88. doi: 10.1111/j.1462-2920.2009.02023.x. Epub 2009 Aug 12.

PMID:
19678831
7.

Short rDNA barcodes for species identification in foraminifera.

Pawlowski J, Lecroq B.

J Eukaryot Microbiol. 2010 Mar-Apr;57(2):197-205. doi: 10.1111/j.1550-7408.2009.00468.x. Epub 2010 Jan 22.

PMID:
20113377
8.

Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record.

Pawlowski J, Bolivar I, Fahrni JF, de Vargas C, Gouy M, Zaninetti L.

Mol Biol Evol. 1997 May;14(5):498-505.

9.

Species identification in the genus Saprolegnia (Oomycetes): defining DNA-based molecular operational taxonomic units.

Sandoval-Sierra JV, Martín MP, Diéguez-Uribeondo J.

Fungal Biol. 2014 Jul;118(7):559-78. doi: 10.1016/j.funbio.2013.10.005. Epub 2013 Nov 15.

PMID:
25088071
10.
11.

Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA.

DeSantis TZ, Dubosarskiy I, Murray SR, Andersen GL.

Bioinformatics. 2003 Aug 12;19(12):1461-8.

12.

Molecular versus taxonomic rates of evolution in planktonic foraminifera.

de Vargas C, Pawlowski J.

Mol Phylogenet Evol. 1998 Jun;9(3):463-9.

PMID:
9667994
13.

Cryptic species of planktonic foraminifera: their effect on palaeoceanographic reconstructions.

Kucera M, Darling KF.

Philos Trans A Math Phys Eng Sci. 2002 Apr 15;360(1793):695-718.

14.

An SSU rDNA barcoding approach to the diversity of marine interstitial cercozoans, including descriptions of four novel genera and nine novel species.

Chantangsi C, Leander BS.

Int J Syst Evol Microbiol. 2010 Aug;60(Pt 8):1962-77. doi: 10.1099/ijs.0.013888-0. Epub 2009 Sep 11.

PMID:
19749031
15.

Identity and systematic position of Paradinium poucheti and other Paradinium-like parasites of marine copepods based on morphology and nuclear-encoded SSU rDNA.

Skovgaard A, Daugbjerg N.

Protist. 2008 Jul;159(3):401-13. doi: 10.1016/j.protis.2008.02.003. Epub 2008 May 15.

PMID:
18485817
16.

Integrated taxonomy: traditional approach and DNA barcoding for the identification of filarioid worms and related parasites (Nematoda).

Ferri E, Barbuto M, Bain O, Galimberti A, Uni S, Guerrero R, Ferté H, Bandi C, Martin C, Casiraghi M.

Front Zool. 2009 Jan 7;6:1. doi: 10.1186/1742-9994-6-1.

17.

The genus Drosophila as a model for testing tree- and character-based methods of species identification using DNA barcoding.

Yassin A, Markow TA, Narechania A, O'Grady PM, DeSalle R.

Mol Phylogenet Evol. 2010 Nov;57(2):509-17. doi: 10.1016/j.ympev.2010.08.020. Epub 2010 Aug 25.

PMID:
20800099
18.

Freshwater foraminiferans revealed by analysis of environmental DNA samples.

Holzmann M, Habura A, Giles H, Bowser SS, Pawlowski J.

J Eukaryot Microbiol. 2003 Mar-Apr;50(2):135-9.

PMID:
12744527
19.

Higher-level phylogeny of Foraminifera inferred from the RNA polymerase II (RPB1) gene.

Longet D, Pawlowski J.

Eur J Protistol. 2007 Aug;43(3):171-7. Epub 2007 May 29.

PMID:
17532615
20.

Flexammina islandica gen. nov. sp. nov. and some new phylotypes of monothalamous foraminifera from the coast of Iceland.

Voltski I, Pawlowski J.

Zootaxa. 2015 Jun 2;3964(2):245-59. doi: 10.11646/zootaxa.3964.2.5.

PMID:
26249434
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