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Replication origins and timing of temporal replication in budding yeast: how to solve the conundrum?

Barberis M, Spiesser TW, Klipp E.

Curr Genomics. 2010 May;11(3):199-211. doi: 10.2174/138920210791110942.


Universal temporal profile of replication origin activation in eukaryotes.

Goldar A, Marsolier-Kergoat MC, Hyrien O.

PLoS One. 2009 Jun 12;4(6):e5899. doi: 10.1371/journal.pone.0005899.


The temporal program of chromosome replication: genomewide replication in clb5{Delta} Saccharomyces cerevisiae.

McCune HJ, Danielson LS, Alvino GM, Collingwood D, Delrow JJ, Fangman WL, Brewer BJ, Raghuraman MK.

Genetics. 2008 Dec;180(4):1833-47. doi: 10.1534/genetics.108.094359. Epub 2008 Oct 1.


DNA replication origins fire stochastically in fission yeast.

Patel PK, Arcangioli B, Baker SP, Bensimon A, Rhind N.

Mol Biol Cell. 2006 Jan;17(1):308-16. Epub 2005 Oct 26.


Origin association of Sld3, Sld7, and Cdc45 proteins is a key step for determination of origin-firing timing.

Tanaka S, Nakato R, Katou Y, Shirahige K, Araki H.

Curr Biol. 2011 Dec 20;21(24):2055-63. doi: 10.1016/j.cub.2011.11.038. Epub 2011 Dec 8.


[Is the replicon model applicable to higher eukaryotes?].

de Recondo AM.

C R Acad Sci III. 1998 Dec;321(12):961-78. Review. French.


Checkpoint independence of most DNA replication origins in fission yeast.

Mickle KL, Ramanathan S, Rosebrock A, Oliva A, Chaudari A, Yompakdee C, Scott D, Leatherwood J, Huberman JA.

BMC Mol Biol. 2007 Dec 19;8:112.


Time to be versatile: regulation of the replication timing program in budding yeast.

Yoshida K, Poveda A, Pasero P.

J Mol Biol. 2013 Nov 29;425(23):4696-705. doi: 10.1016/j.jmb.2013.09.020. Epub 2013 Sep 25. Review.


Genome-wide estimation of firing efficiencies of origins of DNA replication from time-course copy number variation data.

Luo H, Li J, Eshaghi M, Liu J, Karuturi RK.

BMC Bioinformatics. 2010 May 13;11:247. doi: 10.1186/1471-2105-11-247.


A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication.

Santocanale C, Diffley JF.

Nature. 1998 Oct 8;395(6702):615-8.


Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome.

Guilbaud G, Rappailles A, Baker A, Chen CL, Arneodo A, Goldar A, d'Aubenton-Carafa Y, Thermes C, Audit B, Hyrien O.

PLoS Comput Biol. 2011 Dec;7(12):e1002322. doi: 10.1371/journal.pcbi.1002322. Epub 2011 Dec 29.


The spatial and temporal organization of origin firing during the S-phase of fission yeast.

Kaykov A, Nurse P.

Genome Res. 2015 Mar;25(3):391-401. doi: 10.1101/gr.180372.114. Epub 2015 Feb 3.


Identification and characterization of a complex chromosomal replication origin in Schizosaccharomyces pombe.

Zhu J, Brun C, Kurooka H, Yanagida M, Huberman JA.

Chromosoma. 1992;102(1 Suppl):S7-16.


Spatial regulation and organization of DNA replication within the nucleus.

Natsume T, Tanaka TU.

Chromosome Res. 2010 Jan;18(1):7-17. doi: 10.1007/s10577-009-9088-0. Review.


The CDK regulators Cdh1 and Sic1 promote efficient usage of DNA replication origins to prevent chromosomal instability at a chromosome arm.

Ayuda-Durán P, Devesa F, Gomes F, Sequeira-Mendes J, Avila-Zarza C, Gómez M, Calzada A.

Nucleic Acids Res. 2014 Jun;42(11):7057-68. doi: 10.1093/nar/gku313. Epub 2014 Apr 21.


DNA replication in the fission yeast: robustness in the face of uncertainty.

Legouras I, Xouri G, Dimopoulos S, Lygeros J, Lygerou Z.

Yeast. 2006 Oct 15;23(13):951-62. Review.


Enforcement of late replication origin firing by clusters of short G-rich DNA sequences.

Yompakdee C, Huberman JA.

J Biol Chem. 2004 Oct 1;279(40):42337-44. Epub 2004 Aug 3.


Reconciling stochastic origin firing with defined replication timing.

Rhind N, Yang SC, Bechhoefer J.

Chromosome Res. 2010 Jan;18(1):35-43. doi: 10.1007/s10577-009-9093-3.


Stochastic hybrid modeling of DNA replication across a complete genome.

Lygeros J, Koutroumpas K, Dimopoulos S, Legouras I, Kouretas P, Heichinger C, Nurse P, Lygerou Z.

Proc Natl Acad Sci U S A. 2008 Aug 26;105(34):12295-300. doi: 10.1073/pnas.0805549105. Epub 2008 Aug 19.


Conservation of replication timing reveals global and local regulation of replication origin activity.

Müller CA, Nieduszynski CA.

Genome Res. 2012 Oct;22(10):1953-62. doi: 10.1101/gr.139477.112. Epub 2012 Jul 5.

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