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Results: 1 to 20 of 145

1.

Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy.

Lin CC, Hsiang JT, Wu CY, Oyang YJ, Juan HF, Huang HC.

BMC Syst Biol. 2010 Oct 15;4:138. doi: 10.1186/1752-0509-4-138.

PMID:
20950417
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Systematic identification of common functional modules related to heart failure with different etiologies.

Xiao Y, Xu C, Xu L, Guan J, Ping Y, Fan H, Li Y, Zhao H, Li X.

Gene. 2012 May 15;499(2):332-8. doi: 10.1016/j.gene.2012.03.039. Epub 2012 Mar 16.

PMID:
22446039
[PubMed - indexed for MEDLINE]
3.

Dynamic protein interaction modules in human hepatocellular carcinoma progression.

Yu H, Lin CC, Li YY, Zhao Z.

BMC Syst Biol. 2013;7 Suppl 5:S2. doi: 10.1186/1752-0509-7-S5-S2. Epub 2013 Dec 9.

PMID:
24564909
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Layered functional network analysis of gene expression in human heart failure.

Zhu W, Yang L, Du Z.

PLoS One. 2009 Jul 24;4(7):e6288. doi: 10.1371/journal.pone.0006288.

PMID:
19629191
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Unique microRNA profile in end-stage heart failure indicates alterations in specific cardiovascular signaling networks.

Naga Prasad SV, Duan ZH, Gupta MK, Surampudi VS, Volinia S, Calin GA, Liu CG, Kotwal A, Moravec CS, Starling RC, Perez DM, Sen S, Wu Q, Plow EF, Croce CM, Karnik S.

J Biol Chem. 2009 Oct 2;284(40):27487-99. doi: 10.1074/jbc.M109.036541. Epub 2009 Jul 29.

PMID:
19641226
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Laminin-alpha4 and integrin-linked kinase mutations cause human cardiomyopathy via simultaneous defects in cardiomyocytes and endothelial cells.

Knöll R, Postel R, Wang J, Krätzner R, Hennecke G, Vacaru AM, Vakeel P, Schubert C, Murthy K, Rana BK, Kube D, Knöll G, Schäfer K, Hayashi T, Holm T, Kimura A, Schork N, Toliat MR, Nürnberg P, Schultheiss HP, Schaper W, Schaper J, Bos E, Den Hertog J, van Eeden FJ, Peters PJ, Hasenfuss G, Chien KR, Bakkers J.

Circulation. 2007 Jul 31;116(5):515-25. Epub 2007 Jul 23.

PMID:
17646580
[PubMed - indexed for MEDLINE]
Free Article
7.

Identification of dilated cardiomyopathy signature genes through gene expression and network data integration.

Camargo A, Azuaje F.

Genomics. 2008 Dec;92(6):404-13. doi: 10.1016/j.ygeno.2008.05.007. Epub 2008 Jul 1.

PMID:
18595652
[PubMed - indexed for MEDLINE]
Free Article
8.

Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data.

Li M, Wu X, Wang J, Pan Y.

BMC Bioinformatics. 2012 May 23;13:109. doi: 10.1186/1471-2105-13-109.

PMID:
22621308
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Loss of cardiac microRNA-mediated regulation leads to dilated cardiomyopathy and heart failure.

Rao PK, Toyama Y, Chiang HR, Gupta S, Bauer M, Medvid R, Reinhardt F, Liao R, Krieger M, Jaenisch R, Lodish HF, Blelloch R.

Circ Res. 2009 Sep 11;105(6):585-94. doi: 10.1161/CIRCRESAHA.109.200451. Epub 2009 Aug 13.

PMID:
19679836
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Gene expression profiling from endomyocardial biopsy tissue allows distinction between subentities of dilated cardiomyopathy.

Ruppert V, Meyer T, Pankuweit S, Möller E, Funck RC, Grimm W, Maisch B; German Heart Failure Network.

J Thorac Cardiovasc Surg. 2008 Aug;136(2):360-369.e1. doi: 10.1016/j.jtcvs.2008.03.016. Epub 2008 May 12.

PMID:
18692642
[PubMed - indexed for MEDLINE]
11.

VAN: an R package for identifying biologically perturbed networks via differential variability analysis.

Jayaswal V, Schramm SJ, Mann GJ, Wilkins MR, Yang YH.

BMC Res Notes. 2013 Oct 25;6:430. doi: 10.1186/1756-0500-6-430.

PMID:
24156242
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Global proteomic profiling and enrichment maps of dilated cardiomyopathy.

Isserlin R, Merico D, Emili A.

Methods Mol Biol. 2013;1005:53-66. doi: 10.1007/978-1-62703-386-2_5.

PMID:
23606248
[PubMed - indexed for MEDLINE]
13.

Growing functional modules from a seed protein via integration of protein interaction and gene expression data.

Maraziotis IA, Dimitrakopoulou K, Bezerianos A.

BMC Bioinformatics. 2007 Oct 23;8:408.

PMID:
17956603
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis.

Lysenko A, Defoin-Platel M, Hassani-Pak K, Taubert J, Hodgman C, Rawlings CJ, Saqi M.

BMC Bioinformatics. 2011 May 25;12:203. doi: 10.1186/1471-2105-12-203.

PMID:
21612636
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Gene coexpression network analysis as a source of functional annotation for rice genes.

Childs KL, Davidson RM, Buell CR.

PLoS One. 2011;6(7):e22196. doi: 10.1371/journal.pone.0022196. Epub 2011 Jul 22.

PMID:
21799793
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A comparison of the functional modules identified from time course and static PPI network data.

Tang X, Wang J, Liu B, Li M, Chen G, Pan Y.

BMC Bioinformatics. 2011 Aug 15;12:339. doi: 10.1186/1471-2105-12-339.

PMID:
21849017
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Comparative proteomics profiling of a phospholamban mutant mouse model of dilated cardiomyopathy reveals progressive intracellular stress responses.

Gramolini AO, Kislinger T, Alikhani-Koopaei R, Fong V, Thompson NJ, Isserlin R, Sharma P, Oudit GY, Trivieri MG, Fagan A, Kannan A, Higgins DG, Huedig H, Hess G, Arab S, Seidman JG, Seidman CE, Frey B, Perry M, Backx PH, Liu PP, MacLennan DH, Emili A.

Mol Cell Proteomics. 2008 Mar;7(3):519-33. Epub 2007 Nov 30.

PMID:
18056057
[PubMed - indexed for MEDLINE]
Free Article
18.

Transcriptome network analysis of potential candidate genes for heart failure.

Chen J, Wang HY, Zeng CY.

Genet Mol Res. 2013 Oct 18;12(4):4687-97. doi: 10.4238/2013.October.18.7.

PMID:
24222245
[PubMed - indexed for MEDLINE]
Free Article
19.

Detecting functional modules in the yeast protein-protein interaction network.

Chen J, Yuan B.

Bioinformatics. 2006 Sep 15;22(18):2283-90. Epub 2006 Jul 12.

PMID:
16837529
[PubMed - indexed for MEDLINE]
Free Article
20.

An integrative approach to characterize disease-specific pathways and their coordination: a case study in cancer.

Xu M, Kao MC, Nunez-Iglesias J, Nevins JR, West M, Zhou XJ.

BMC Genomics. 2008;9 Suppl 1:S12. doi: 10.1186/1471-2164-9-S1-S12.

PMID:
18366601
[PubMed - indexed for MEDLINE]
Free PMC Article

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