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Items: 1 to 20 of 206

1.

Automated extraction of DNA and RNA from a single formalin-fixed paraffin-embedded tissue section for analysis of both single-nucleotide polymorphisms and mRNA expression.

Hennig G, Gehrmann M, Stropp U, Brauch H, Fritz P, Eichelbaum M, Schwab M, Schroth W.

Clin Chem. 2010 Dec;56(12):1845-53. doi: 10.1373/clinchem.2010.151233. Epub 2010 Oct 14.

2.

RNA extraction from archival formalin-fixed paraffin-embedded tissue: a comparison of manual, semiautomated, and fully automated purification methods.

Bohmann K, Hennig G, Rogel U, Poremba C, Mueller BM, Fritz P, Stoerkel S, Schaefer KL.

Clin Chem. 2009 Sep;55(9):1719-27. doi: 10.1373/clinchem.2008.122572. Epub 2009 Jul 17.

3.

Applicability of a System for fully automated nucleic acid extraction from formalin-fixed paraffin-embedded sections for routine KRAS mutation testing.

Lehmann A, Schewe C, Hennig G, Denkert C, Weichert W, Budczies J, Dietel M.

Diagn Mol Pathol. 2012 Jun;21(2):114-9. doi: 10.1097/PDM.0b013e31823569ca.

PMID:
22555094
4.

MALDI-TOF MS and TaqMan assisted SNP genotyping of DNA isolated from formalin-fixed and paraffin-embedded tissues (FFPET).

Jaremko M, Justenhoven C, Abraham BK, Schroth W, Fritz P, Brod S, Vollmert C, Illig T, Brauch H.

Hum Mutat. 2005 Mar;25(3):232-8.

PMID:
15706592
5.

A multiplex MALDI-TOF MS approach facilitates genotyping of DNA from formalin-fixed paraffin-embedded tumour specimens.

Horn H, Pott C, Kalla J, Dreyling M, Rosenwald A, Ott G, Schwab M, Schaeffeler E.

Pharmacogenet Genomics. 2010 Oct;20(10):598-604. doi: 10.1097/FPC.0b013e32833deb16.

PMID:
20802378
6.

[Predictive and prognostic markers of breast cancer. Molecular biological analysis of fixed tumor tissue].

Petry C, Gehrmann M, von Törne C, Weber K, Stropp U, Hennig G.

Pathologe. 2008 Nov;29 Suppl 2:181-3. doi: 10.1007/s00292-008-1081-4. German.

PMID:
18843491
7.

Excavation of a buried treasure--DNA, mRNA, miRNA and protein analysis in formalin fixed, paraffin embedded tissues.

Klopfleisch R, Weiss AT, Gruber AD.

Histol Histopathol. 2011 Jun;26(6):797-810. Review.

PMID:
21472693
8.

Evaluation of DNA extraction methods and real time PCR optimization on formalin-fixed paraffin-embedded tissues.

Dedhia P, Tarale S, Dhongde G, Khadapkar R, Das B.

Asian Pac J Cancer Prev. 2007 Jan-Mar;8(1):55-9.

9.

Quantitative proteomics using formalin-fixed paraffin-embedded tissues of oral squamous cell carcinoma.

Negishi A, Masuda M, Ono M, Honda K, Shitashige M, Satow R, Sakuma T, Kuwabara H, Nakanishi Y, Kanai Y, Omura K, Hirohashi S, Yamada T.

Cancer Sci. 2009 Sep;100(9):1605-11. doi: 10.1111/j.1349-7006.2009.01227.x. Epub 2009 May 18.

10.

Comparison of gene expression profiling by reverse transcription quantitative PCR between fresh frozen and formalin-fixed, paraffin-embedded breast cancer tissues.

Sánchez-Navarro I, Gámez-Pozo A, González-Barón M, Pinto-Marín A, Hardisson D, López R, Madero R, Cejas P, Mendiola M, Espinosa E, Vara JA.

Biotechniques. 2010 May;48(5):389-97. doi: 10.2144/000113388.

11.

Comparison of formalin, ethanol, and Histochoice fixation on the PCR amplification from paraffin-embedded breast cancer tissue.

Giannella C, Zito FA, Colonna F, Paradiso A, Marzullo F, Alaibac M, Schittulli F.

Eur J Clin Chem Clin Biochem. 1997 Aug;35(8):633-5.

PMID:
9298355
12.

[SNP typing of formalin-fixed tissue in individual identification].

Lin Y, Li L, Liu Y, Zhao ZM.

Fa Yi Xue Za Zhi. 2010 Dec;26(6):446-8. Review. Chinese.

PMID:
21425609
13.

Will PAXgene substitute formalin? A morphological and molecular comparative study using a new fixative system.

Belloni B, Lambertini C, Nuciforo P, Phillips J, Bruening E, Wong S, Dummer R.

J Clin Pathol. 2013 Feb;66(2):124-35. doi: 10.1136/jclinpath-2012-200983. Epub 2012 Nov 3.

PMID:
23125305
14.

Nucleic acid quantity and quality from paraffin blocks: defining optimal fixation, processing and DNA/RNA extraction techniques.

Turashvili G, Yang W, McKinney S, Kalloger S, Gale N, Ng Y, Chow K, Bell L, Lorette J, Carrier M, Luk M, Aparicio S, Huntsman D, Yip S.

Exp Mol Pathol. 2012 Feb;92(1):33-43. doi: 10.1016/j.yexmp.2011.09.013. Epub 2011 Sep 21.

PMID:
21963600
15.

Identification of methods for use of formalin-fixed, paraffin-embedded tissue samples in RNA expression profiling.

Roberts L, Bowers J, Sensinger K, Lisowski A, Getts R, Anderson MG.

Genomics. 2009 Nov;94(5):341-8. doi: 10.1016/j.ygeno.2009.07.007. Epub 2009 Aug 4.

16.

Quantitative determination of estrogen receptor, progesterone receptor, and HER2 mRNA in formalin-fixed paraffin-embedded tissue--a new option for predictive biomarker assessment in breast cancer.

Müller BM, Kronenwett R, Hennig G, Euting H, Weber K, Bohmann K, Weichert W, Altmann G, Roth C, Winzer KJ, Kristiansen G, Petry C, Dietel M, Denkert C.

Diagn Mol Pathol. 2011 Mar;20(1):1-10. doi: 10.1097/PDM.0b013e3181e3630c.

PMID:
21326033
17.

Optimisation of DNA and RNA extraction from archival formalin-fixed tissue.

Coombs NJ, Gough AC, Primrose JN.

Nucleic Acids Res. 1999 Aug 15;27(16):e12.

18.

Effective DNA/RNA co-extraction for analysis of microRNAs, mRNAs, and genomic DNA from formalin-fixed paraffin-embedded specimens.

Kotorashvili A, Ramnauth A, Liu C, Lin J, Ye K, Kim R, Hazan R, Rohan T, Fineberg S, Loudig O.

PLoS One. 2012;7(4):e34683. doi: 10.1371/journal.pone.0034683. Epub 2012 Apr 13.

19.

Reliability and reproducibility of a RNA preamplification method for low-density array analysis from formalin-fixed paraffin-embedded breast cancer samples.

Ciotti P, Garuti A, Ballestrero A, Cirmena G, Chiaramondia M, Baccini P, Bellone E, Mandich P.

Diagn Mol Pathol. 2009 Jun;18(2):112-8. doi: 10.1097/PDM.0b013e3181831320.

PMID:
19430292
20.

Proteomics out of the archive: Two-dimensional electrophoresis and mass spectrometry using HOPE-fixed, paraffin-embedded tissues.

Kähler D, Alexander C, Schultz H, Abdullah M, Branscheid D, Lindner B, Zabel P, Vollmer E, Goldmann T.

J Histochem Cytochem. 2010 Mar;58(3):221-8. doi: 10.1369/jhc.2009.954065. Epub 2009 Dec 7.

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