Format
Items per page
Sort by

Send to:

Choose Destination

Links from PubMed

Items: 1 to 20 of 151

1.

Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis.

Zheng Q, Ryvkin P, Li F, Dragomir I, Valladares O, Yang J, Cao K, Wang LS, Gregory BD.

PLoS Genet. 2010 Sep 30;6(9):e1001141. doi: 10.1371/journal.pgen.1001141.

2.

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

Ding Y, Tang Y, Kwok CK, Zhang Y, Bevilacqua PC, Assmann SM.

Nature. 2014 Jan 30;505(7485):696-700. doi: 10.1038/nature12756. Epub 2013 Nov 24.

PMID:
24270811
3.

Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome.

Li F, Zheng Q, Vandivier LE, Willmann MR, Chen Y, Gregory BD.

Plant Cell. 2012 Nov;24(11):4346-59. doi: 10.1105/tpc.112.104232. Epub 2012 Nov 13.

4.

Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max.

Zabala G, Campos E, Varala KK, Bloomfield S, Jones SI, Win H, Tuteja JH, Calla B, Clough SJ, Hudson M, Vodkin LO.

BMC Plant Biol. 2012 Oct 2;12:177. doi: 10.1186/1471-2229-12-177.

5.

Intron splicing suppresses RNA silencing in Arabidopsis.

Christie M, Croft LJ, Carroll BJ.

Plant J. 2011 Oct;68(1):159-67. doi: 10.1111/j.1365-313X.2011.04676.x. Epub 2011 Aug 5.

PMID:
21689169
6.

Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in Arabidopsis reveals dependency on miRNA- and tasiRNA-directed targeting.

Howell MD, Fahlgren N, Chapman EJ, Cumbie JS, Sullivan CM, Givan SA, Kasschau KD, Carrington JC.

Plant Cell. 2007 Mar;19(3):926-42. Epub 2007 Mar 30.

7.

Sequencing of RDR6-dependent double-stranded RNAs reveals novel features of plant siRNA biogenesis.

Rajeswaran R, Aregger M, Zvereva AS, Borah BK, Gubaeva EG, Pooggin MM.

Nucleic Acids Res. 2012 Jul;40(13):6241-54. doi: 10.1093/nar/gks242. Epub 2012 Mar 19.

8.

The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes.

Baumbusch LO, Thorstensen T, Krauss V, Fischer A, Naumann K, Assalkhou R, Schulz I, Reuter G, Aalen RB.

Nucleic Acids Res. 2001 Nov 1;29(21):4319-33.

9.

Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.

Sherstnev A, Duc C, Cole C, Zacharaki V, Hornyik C, Ozsolak F, Milos PM, Barton GJ, Simpson GG.

Nat Struct Mol Biol. 2012 Aug;19(8):845-52. doi: 10.1038/nsmb.2345. Epub 2012 Jul 22.

10.

Evidence for large complex networks of plant short silencing RNAs.

MacLean D, Elina N, Havecker ER, Heimstaedt SB, Studholme DJ, Baulcombe DC.

PLoS One. 2010 Mar 26;5(3):e9901. doi: 10.1371/journal.pone.0009901.

11.

Alternative mRNA processing increases the complexity of microRNA-based gene regulation in Arabidopsis.

Yang X, Zhang H, Li L.

Plant J. 2012 May;70(3):421-31. doi: 10.1111/j.1365-313X.2011.04882.x. Epub 2012 Jan 16.

PMID:
22247970
12.

Intronic regions of plant genes potentially encode RDR (RNA-dependent RNA polymerase)-dependent small RNAs.

Qin J, Ma X, Yi Z, Tang Z, Meng Y.

J Exp Bot. 2015 Apr;66(7):1763-8. doi: 10.1093/jxb/eru542. Epub 2015 Jan 21.

PMID:
25609829
13.

Detection of Pol IV/RDR2-dependent transcripts at the genomic scale in Arabidopsis reveals features and regulation of siRNA biogenesis.

Li S, Vandivier LE, Tu B, Gao L, Won SY, Li S, Zheng B, Gregory BD, Chen X.

Genome Res. 2015 Feb;25(2):235-45. doi: 10.1101/gr.182238.114. Epub 2014 Nov 20.

14.

Experimental RNomics: identification of 140 candidates for small non-messenger RNAs in the plant Arabidopsis thaliana.

Marker C, Zemann A, Terhörst T, Kiefmann M, Kastenmayer JP, Green P, Bachellerie JP, Brosius J, Hüttenhofer A.

Curr Biol. 2002 Dec 10;12(23):2002-13.

15.

Arabidopsis mRNA secondary structure correlates with protein function and domains.

Vandivier L, Li F, Zheng Q, Willmann M, Chen Y, Gregory B.

Plant Signal Behav. 2013 Jun;8(6):e24301. doi: 10.4161/psb.24301. Epub 2013 Apr 19.

16.
17.

Mining small RNA sequencing data: a new approach to identify small nucleolar RNAs in Arabidopsis.

Chen HM, Wu SH.

Nucleic Acids Res. 2009 May;37(9):e69. doi: 10.1093/nar/gkp225. Epub 2009 Apr 8.

19.

An expression atlas of rice mRNAs and small RNAs.

Nobuta K, Venu RC, Lu C, Beló A, Vemaraju K, Kulkarni K, Wang W, Pillay M, Green PJ, Wang GL, Meyers BC.

Nat Biotechnol. 2007 Apr;25(4):473-7. Epub 2007 Mar 11.

PMID:
17351617
20.

Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing.

Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ.

Plant Physiol. 2009 Dec;151(4):2120-32. doi: 10.1104/pp.109.147280. Epub 2009 Oct 23.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk