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Results: 1 to 20 of 60

1.

A nonparametric approach to detect nonlinear correlation in gene expression.

Chen YA, Almeida JS, Richards AJ, Müller P, Carroll RJ, Rohrer B.

J Comput Graph Stat. 2010 Sep 1;19(3):552-568.

PMID:
20877445
[PubMed]
Free PMC Article
2.

Analysis of gene coexpression by B-spline based CoD estimation.

Li H, Sun Y, Zhan M.

EURASIP J Bioinform Syst Biol. 2007:49478.

PMID:
17846662
[PubMed]
Free PMC Article
3.

Transition dependency: a gene-gene interaction measure for times series microarray data.

Gao X, Pu DQ, Song PX.

EURASIP J Bioinform Syst Biol. 2009:535869. doi: 10.1155/2009/535869. Epub 2009 Feb 5.

PMID:
19223963
[PubMed]
Free PMC Article
4.

Quantitative trait associated microarray gene expression data analysis.

Qu Y, Xu S.

Mol Biol Evol. 2006 Aug;23(8):1558-73. Epub 2006 May 26.

PMID:
16731570
[PubMed - indexed for MEDLINE]
Free Article
5.

Beyond synexpression relationships: local clustering of time-shifted and inverted gene expression profiles identifies new, biologically relevant interactions.

Qian J, Dolled-Filhart M, Lin J, Yu H, Gerstein M.

J Mol Biol. 2001 Dec 14;314(5):1053-66.

PMID:
11743722
[PubMed - indexed for MEDLINE]
6.

Differential dependency network analysis to identify condition-specific topological changes in biological networks.

Zhang B, Li H, Riggins RB, Zhan M, Xuan J, Zhang Z, Hoffman EP, Clarke R, Wang Y.

Bioinformatics. 2009 Feb 15;25(4):526-32. doi: 10.1093/bioinformatics/btn660. Epub 2008 Dec 26.

PMID:
19112081
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Using weighted permutation scores to detect differential gene expression with microarray data.

Guo X, Pan W.

J Bioinform Comput Biol. 2005 Aug;3(4):989-1006.

PMID:
16078371
[PubMed - indexed for MEDLINE]
8.

Dynamic Bayesian network and nonparametric regression for nonlinear modeling of gene networks from time series gene expression data.

Kim S, Imoto S, Miyano S.

Biosystems. 2004 Jul;75(1-3):57-65.

PMID:
15245804
[PubMed - indexed for MEDLINE]
9.

An information theoretic exploratory method for learning patterns of conditional gene coexpression from microarray data.

Boscolo R, Liao JC, Roychowdhury VP.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Jan-Mar;5(1):15-24. doi: 10.1109/TCBB.2007.1056.

PMID:
18245872
[PubMed - indexed for MEDLINE]
10.
11.

Multidestructive pathways triggered in photoreceptor cell death of the rd mouse as determined through gene expression profiling.

Rohrer B, Pinto FR, Hulse KE, Lohr HR, Zhang L, Almeida JS.

J Biol Chem. 2004 Oct 1;279(40):41903-10. Epub 2004 Jun 24.

PMID:
15218024
[PubMed - indexed for MEDLINE]
Free Article
12.

Probe-level measurement error improves accuracy in detecting differential gene expression.

Liu X, Milo M, Lawrence ND, Rattray M.

Bioinformatics. 2006 Sep 1;22(17):2107-13. Epub 2006 Jul 4.

PMID:
16820429
[PubMed - indexed for MEDLINE]
Free Article
13.

Semiparametric clustering method for microarray data analysis.

Yuan A, He W.

J Bioinform Comput Biol. 2008 Apr;6(2):261-82.

PMID:
18464322
[PubMed - indexed for MEDLINE]
14.

Segmentation and intensity estimation of microarray images using a gamma-t mixture model.

Baek J, Son YS, McLachlan GJ.

Bioinformatics. 2007 Feb 15;23(4):458-65. Epub 2006 Dec 12.

PMID:
17166856
[PubMed - indexed for MEDLINE]
Free Article
15.

Metric for measuring the effectiveness of clustering of DNA microarray expression.

Loganantharaj R, Cheepala S, Clifford J.

BMC Bioinformatics. 2006 Sep 6;7 Suppl 2:S5.

PMID:
17118148
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Improving gene quantification by adjustable spot-image restoration.

Daskalakis A, Cavouras D, Bougioukos P, Kostopoulos S, Glotsos D, Kalatzis I, Kagadis GC, Argyropoulos C, Nikiforidis G.

Bioinformatics. 2007 Sep 1;23(17):2265-72. Epub 2007 Jun 28.

PMID:
17599935
[PubMed - indexed for MEDLINE]
Free Article
17.

CHESS (CgHExpreSS): a comprehensive analysis tool for the analysis of genomic alterations and their effects on the expression profile of the genome.

Lee M, Kim Y.

BMC Bioinformatics. 2009 Dec 16;10:424. doi: 10.1186/1471-2105-10-424.

PMID:
20003544
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Correlation between gene expression and clinical data through linear and nonlinear principal components analyses: muscular dystrophies as case studies.

Romualdi C, Giuliani A, Millino C, Celegato B, Benigni R, Lanfranchi G.

OMICS. 2009 Jun;13(3):173-84. doi: 10.1089/omi.2009.0003.

PMID:
19405797
[PubMed - indexed for MEDLINE]
19.

Identifying differentially expressed genes in human acute leukemia and mouse brain microarray datasets utilizing QTModel.

Yang J, Zou Y, Zhu J.

Funct Integr Genomics. 2009 Feb;9(1):59-66. doi: 10.1007/s10142-008-0096-5. Epub 2008 Sep 5.

PMID:
18773231
[PubMed - indexed for MEDLINE]
20.

Detecting clusters of different geometrical shapes in microarray gene expression data.

Kim DW, Lee KH, Lee D.

Bioinformatics. 2005 May 1;21(9):1927-34. Epub 2005 Jan 12.

PMID:
15647300
[PubMed - indexed for MEDLINE]
Free Article

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