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Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana.

Yu Z, Haberer G, Matthes M, Rattei T, Mayer KF, Gierl A, Torres-Ruiz RA.

Proc Natl Acad Sci U S A. 2010 Oct 12;107(41):17809-14. doi: 10.1073/pnas.1000852107. Epub 2010 Sep 27.


Differential sensitivity of the Arabidopsis thaliana transcriptome and enhancers to the effects of genome doubling.

Pignatta D, Dilkes BP, Yoo SY, Henry IM, Madlung A, Doerge RW, Jeffrey Chen Z, Comai L.

New Phytol. 2010 Apr;186(1):194-206. doi: 10.1111/j.1469-8137.2010.03198.x.


Genomewide nonadditive gene regulation in Arabidopsis allotetraploids.

Wang J, Tian L, Lee HS, Wei NE, Jiang H, Watson B, Madlung A, Osborn TC, Doerge RW, Comai L, Chen ZJ.

Genetics. 2006 Jan;172(1):507-17. Epub 2005 Sep 19.


Transcriptomic shock generates evolutionary novelty in a newly formed, natural allopolyploid plant.

Buggs RJ, Zhang L, Miles N, Tate JA, Gao L, Wei W, Schnable PS, Barbazuk WB, Soltis PS, Soltis DE.

Curr Biol. 2011 Apr 12;21(7):551-6. doi: 10.1016/j.cub.2011.02.016. Epub 2011 Mar 17.


Proteomic divergence in Arabidopsis autopolyploids and allopolyploids and their progenitors.

Ng DW, Zhang C, Miller M, Shen Z, Briggs SP, Chen ZJ.

Heredity (Edinb). 2012 Apr;108(4):419-30. doi: 10.1038/hdy.2011.92. Epub 2011 Oct 19.


Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis.

Akama S, Shimizu-Inatsugi R, Shimizu KK, Sese J.

Nucleic Acids Res. 2014 Apr;42(6):e46. doi: 10.1093/nar/gkt1376. Epub 2014 Jan 13.


Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis.

Zhang PG, Huang SZ, Pin AL, Adams KL.

Mol Biol Evol. 2010 Jul;27(7):1686-97. doi: 10.1093/molbev/msq054. Epub 2010 Feb 25.


Parental squabbles and genome expression: lessons from the polyploids.

Pignatta D, Comai L.

J Biol. 2009;8(4):43. doi: 10.1186/jbiol140. Epub 2009 May 1. Review.


Genetic and epigenetic aspects of polyploid evolution in plants.

Madlung A, Wendel JF.

Cytogenet Genome Res. 2013;140(2-4):270-85. doi: 10.1159/000351430. Epub 2013 Jun 8. Review.


Transcriptomic changes following recent natural hybridization and allopolyploidy in the salt marsh species Spartina x townsendii and Spartina anglica (Poaceae).

Chelaifa H, Monnier A, Ainouche M.

New Phytol. 2010 Apr;186(1):161-74. doi: 10.1111/j.1469-8137.2010.03179.x. Epub 2010 Feb 8.


Dramatic change in function and expression pattern of a gene duplicated by polyploidy created a paternal effect gene in the Brassicaceae.

Liu SL, Adams KL.

Mol Biol Evol. 2010 Dec;27(12):2817-28. doi: 10.1093/molbev/msq169. Epub 2010 Jul 8.


A comparison of transcriptome and epigenetic status between closely related species in the genus Arabidopsis.

Kawanabe T, Fujimoto R, Sasaki T, Taylor JM, Dennis ES.

Gene. 2012 Sep 15;506(2):301-9. doi: 10.1016/j.gene.2012.07.003. Epub 2012 Jul 13.


Genomic changes in synthetic Arabidopsis polyploids.

Madlung A, Tyagi AP, Watson B, Jiang H, Kagochi T, Doerge RW, Martienssen R, Comai L.

Plant J. 2005 Jan;41(2):221-30.


Genetic and epigenetic interactions in allopolyploid plants.

Comai L.

Plant Mol Biol. 2000 Jun;43(2-3):387-99. Review.


Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds.

McKeown PC, Laouielle-Duprat S, Prins P, Wolff P, Schmid MW, Donoghue MT, Fort A, Duszynska D, Comte A, Lao NT, Wennblom TJ, Smant G, Köhler C, Grossniklaus U, Spillane C.

BMC Plant Biol. 2011 Aug 12;11:113. doi: 10.1186/1471-2229-11-113.


The allotetraploid Arabidopsis thaliana-Arabidopsis lyrata subsp. petraea as an alternative model system for the study of polyploidy in plants.

Beaulieu J, Jean M, Belzile F.

Mol Genet Genomics. 2009 Apr;281(4):421-35. doi: 10.1007/s00438-008-0421-7. Epub 2009 Jan 16.


Phenotypic and transcriptomic changes associated with potato autopolyploidization.

Stupar RM, Bhaskar PB, Yandell BS, Rensink WA, Hart AL, Ouyang S, Veilleux RE, Busse JS, Erhardt RJ, Buell CR, Jiang J.

Genetics. 2007 Aug;176(4):2055-67. Epub 2007 Jun 11.


Natural genetic variation in whole-genome expression in Arabidopsis thaliana: the impact of physiological QTL introgression.

Juenger TE, Wayne T, Boles S, Symonds VV, McKay J, Coughlan SJ.

Mol Ecol. 2006 Apr;15(5):1351-65.


Homoeolog-specific transcriptional bias in allopolyploid wheat.

Akhunova AR, Matniyazov RT, Liang H, Akhunov ED.

BMC Genomics. 2010 Sep 17;11:505. doi: 10.1186/1471-2164-11-505.

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