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Results: 1 to 20 of 72

1.

TAP Hunter: a SVM-based system for predicting TAP ligands using local description of amino acid sequence.

Lam TH, Mamitsuka H, Ren EC, Tong JC.

Immunome Res. 2010 Sep 27;6 Suppl 1:S6. doi: 10.1186/1745-7580-6-S1-S6.

PMID:
20875157
[PubMed]
Free PMC Article
2.

Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes.

Zhang GL, Khan AM, Srinivasan KN, Heiny A, Lee K, Kwoh CK, August JT, Brusic V.

BMC Bioinformatics. 2008;9 Suppl 1:S19. doi: 10.1186/1471-2105-9-S1-S19.

PMID:
18315850
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

PRED(TAP): a system for prediction of peptide binding to the human transporter associated with antigen processing.

Zhang GL, Petrovsky N, Kwoh CK, August JT, Brusic V.

Immunome Res. 2006 May 23;2:3.

PMID:
16719926
[PubMed]
Free PMC Article
4.

Analysis and prediction of affinity of TAP binding peptides using cascade SVM.

Bhasin M, Raghava GP.

Protein Sci. 2004 Mar;13(3):596-607.

PMID:
14978300
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Relationship between peptide selectivities of human transporters associated with antigen processing and HLA class I molecules.

Daniel S, Brusic V, Caillat-Zucman S, Petrovsky N, Harrison L, Riganelli D, Sinigaglia F, Gallazzi F, Hammer J, van Endert PM.

J Immunol. 1998 Jul 15;161(2):617-24.

PMID:
9670935
[PubMed - indexed for MEDLINE]
Free Article
6.

Prediction of protein allergenicity using local description of amino acid sequence.

Tong JC, Tammi MT.

Front Biosci. 2008 May 1;13:6072-8.

PMID:
18508644
[PubMed - indexed for MEDLINE]
7.

Quantitative modeling of peptide binding to TAP using support vector machine.

Diez-Rivero CM, Chenlo B, Zuluaga P, Reche PA.

Proteins. 2010 Jan;78(1):63-72. doi: 10.1002/prot.22535.

PMID:
19705485
[PubMed - indexed for MEDLINE]
8.

Transporter associated with antigen processing preselection of peptides binding to the MHC: a bioinformatic evaluation.

Doytchinova I, Hemsley S, Flower DR.

J Immunol. 2004 Dec 1;173(11):6813-9.

PMID:
15557175
[PubMed - indexed for MEDLINE]
Free Article
9.

Peptide selection for presentation by HLA class I: a role for the human transporter associated with antigen processing?

van Endert PM.

Immunol Res. 1996;15(4):265-79. Review.

PMID:
8988395
[PubMed - indexed for MEDLINE]
10.

Prediction of HLA-DQ3.2beta ligands: evidence of multiple registers in class II binding peptides.

Tong JC, Zhang GL, Tan TW, August JT, Brusic V, Ranganathan S.

Bioinformatics. 2006 May 15;22(10):1232-8. Epub 2006 Mar 1.

PMID:
16510499
[PubMed - indexed for MEDLINE]
Free Article
11.

Human transporters associated with antigen processing (TAPs) select epitope precursor peptides for processing in the endoplasmic reticulum and presentation to T cells.

Lauvau G, Kakimi K, Niedermann G, Ostankovitch M, Yotnda P, Firat H, Chisari FV, van Endert PM.

J Exp Med. 1999 Nov 1;190(9):1227-40.

PMID:
10544195
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Selection and binding of peptides to human transporters associated with antigen processing and rat cim-a and -b.

Wang P, Gyllner G, Kvist S.

J Immunol. 1996 Jul 1;157(1):213-20.

PMID:
8683118
[PubMed - indexed for MEDLINE]
13.

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.

PMID:
17570145
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Tap-1 and Tap-2 gene therapy selectively restores conformationally dependent HLA Class I expression in type I diabetic cells.

Wang F, Li X, Annis B, Faustman DL.

Hum Gene Ther. 1995 Aug;6(8):1005-17.

PMID:
7578413
[PubMed - indexed for MEDLINE]
15.

Murine transporter associated with antigen presentation (TAP) preferences influence class I-restricted T cell responses.

Yellen-Shaw AJ, Laughlin CE, Metrione RM, Eisenlohr LC.

J Exp Med. 1997 Nov 17;186(10):1655-62.

PMID:
9362526
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Requirements for HLA-B*2705-binding peptides with special regard to the transporter associated with antigen processing (TAP).

Kuipers JG, Raybourne R, Williams KM, Zeidler H, Yu DT.

Clin Exp Rheumatol. 1996 Sep-Oct;14(5):523-9.

PMID:
8913654
[PubMed - indexed for MEDLINE]
17.

Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of k-spaced amino acid pairs.

Chen YZ, Tang YR, Sheng ZY, Zhang Z.

BMC Bioinformatics. 2008 Feb 18;9:101. doi: 10.1186/1471-2105-9-101.

PMID:
18282281
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Exogenous peptides presented by transporter associated with antigen processing (TAP)-deficient and TAP-competent cells: intracellular loading and kinetics of presentation.

Luft T, Rizkalla M, Tai TY, Chen Q, MacFarlan RI, Davis ID, Maraskovsky E, Cebon J.

J Immunol. 2001 Sep 1;167(5):2529-37.

PMID:
11509592
[PubMed - indexed for MEDLINE]
Free Article
19.

Restoration of endogenous antigen processing in Burkitt's lymphoma cells by Epstein-Barr virus latent membrane protein-1: coordinate up-regulation of peptide transporters and HLA-class I antigen expression.

Rowe M, Khanna R, Jacob CA, Argaet V, Kelly A, Powis S, Belich M, Croom-Carter D, Lee S, Burrows SR, et al.

Eur J Immunol. 1995 May;25(5):1374-84.

PMID:
7774641
[PubMed - indexed for MEDLINE]
20.

The peptide-binding motif for the human transporter associated with antigen processing.

van Endert PM, Riganelli D, Greco G, Fleischhauer K, Sidney J, Sette A, Bach JF.

J Exp Med. 1995 Dec 1;182(6):1883-95.

PMID:
7500034
[PubMed - indexed for MEDLINE]
Free PMC Article

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