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Results: 1 to 20 of 82

1.

The paradox of multiplex DNA melting on a surface.

Williams L, Blair S, Chagovetz A, Fish DJ, Benight AS.

Anal Biochem. 2011 Feb 1;409(1):150-2. doi: 10.1016/j.ab.2010.09.024. Epub 2010 Oct 30.

PMID:
20869345
[PubMed - indexed for MEDLINE]
2.

Molecular thermodynamic model for DNA melting in ionic and crowded solutions.

Liu Y, Kermanpour F, Liu HL, Hu Y, Shang YZ, Sandler SI, Jiang JW.

J Phys Chem B. 2010 Aug 5;114(30):9905-11. doi: 10.1021/jp104121q.

PMID:
20666530
[PubMed - indexed for MEDLINE]
3.

Secondary structure formation of homopolymeric single-stranded nucleic acids including force and loop entropy: implications for DNA hybridization.

Einert TR, Orland H, Netz RR.

Eur Phys J E Soft Matter. 2011 Jun;34(6):1-15. doi: 10.1140/epje/i2011-11055-2. Epub 2011 Jun 1.

PMID:
21626368
[PubMed - indexed for MEDLINE]
4.

Counterion association with native and denatured nucleic acids: an experimental approach.

Völker J, Klump HH, Manning GS, Breslauer KJ.

J Mol Biol. 2001 Jul 27;310(5):1011-25.

PMID:
11501992
[PubMed - indexed for MEDLINE]
5.

DNA melting in aggregates: impeded or facilitated?

Cherstvy AG, Kornyshev AA.

J Phys Chem B. 2005 Jul 7;109(26):13024-9.

PMID:
16852616
[PubMed - indexed for MEDLINE]
6.

Thermodynamic stability of the 5' dangling-ended DNA hairpins formed from sequences 5'-(XY)2GGATAC(T)4GTATCC-3', where X, Y = A, T, G, C.

Doktycz MJ, Paner TM, Amaratunga M, Benight AS.

Biopolymers. 1990;30(7-8):829-45.

PMID:
2275982
[PubMed - indexed for MEDLINE]
7.

Raman spectroscopy of DNA-metal complexes. II. The thermal denaturation of DNA in the presence of Sr2+, Ba2+, Mg2+, Ca2+, Mn2+, Co2+, Ni2+, and Cd2+.

Duguid JG, Bloomfield VA, Benevides JM, Thomas GJ Jr.

Biophys J. 1995 Dec;69(6):2623-41.

PMID:
8599669
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

An empirical approach for thermal stability (Tm) prediction of PNA/DNA duplexes.

Takiya T, Seto Y, Yasuda H, Suzuki T, Kawai K.

Nucleic Acids Symp Ser (Oxf). 2004;(48):131-2.

PMID:
17150513
[PubMed - indexed for MEDLINE]
Free Article
9.

Force induced melting of the constrained DNA.

Singh AR, Giri D, Kumar S.

J Chem Phys. 2010 Jun 21;132(23):235105. doi: 10.1063/1.3427587.

PMID:
20572742
[PubMed - indexed for MEDLINE]
10.

Singular value decomposition of 3-D DNA melting curves reveals complexity in the melting process.

Haq I, Chowdhry BZ, Chaires JB.

Eur Biophys J. 1997;26(6):419-26.

PMID:
9404005
[PubMed - indexed for MEDLINE]
11.

Thermodynamic, spectroscopic, and equilibrium binding studies of DNA sequence context effects in six 22-base pair deoxyoligonucleotides.

Riccelli PV, Vallone PM, Kashin I, Faldasz BD, Lane MJ, Benight AS.

Biochemistry. 1999 Aug 24;38(34):11197-208.

PMID:
10460177
[PubMed - indexed for MEDLINE]
12.

DNA melting in slit pores: a reaction density functional theory.

Liu Y, Shang Y, Liu H, Hu Y, Jiang J.

J Phys Chem B. 2011 Mar 3;115(8):1848-55. doi: 10.1021/jp108415x. Epub 2011 Feb 7.

PMID:
21299229
[PubMed - indexed for MEDLINE]
13.

Electrochemical measurements of DNA melting on surfaces.

Belozerova I, Ge D, Levicky R.

Methods Mol Biol. 2013;1025:127-36. doi: 10.1007/978-1-62703-462-3_10.

PMID:
23918334
[PubMed - indexed for MEDLINE]
14.

Melting of a DNA hairpin without hyperchromism.

Davis TM, McFail-Isom L, Keane E, Williams LD.

Biochemistry. 1998 May 12;37(19):6975-8.

PMID:
9578584
[PubMed - indexed for MEDLINE]
15.

The kinetics of oligonucleotide replacements.

Reynaldo LP, Vologodskii AV, Neri BP, Lyamichev VI.

J Mol Biol. 2000 Mar 24;297(2):511-20.

PMID:
10715217
[PubMed - indexed for MEDLINE]
16.

Bubble nucleation and cooperativity in DNA melting.

Ares S, Voulgarakis NK, Rasmussen KO, Bishop AR.

Phys Rev Lett. 2005 Jan 28;94(3):035504. Epub 2005 Jan 27.

PMID:
15698282
[PubMed - indexed for MEDLINE]
17.

DNA folding and melting observed in real time redefine the energy landscape.

Ma H, Wan C, Wu A, Zewail AH.

Proc Natl Acad Sci U S A. 2007 Jan 16;104(3):712-6. Epub 2007 Jan 10.

PMID:
17215374
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A more unified picture for the thermodynamics of nucleic acid duplex melting: a characterization by calorimetric and volumetric techniques.

Chalikian TV, Völker J, Plum GE, Breslauer KJ.

Proc Natl Acad Sci U S A. 1999 Jul 6;96(14):7853-8.

PMID:
10393911
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Preliminary dielectric measurement and analysis protocol for determining the melting temperature and binding energy of short sequences of DNA in solution.

Spillman WB Jr, Asmatulu R, Jullian CF, Geist B, Claus RO, Robertson JL.

Biotechnol J. 2008 Feb;3(2):252-63. Erratum in: Biotechnol J. 2008 Feb;3(2):273.

PMID:
18034436
[PubMed - indexed for MEDLINE]
20.

Studies of DNA dumbbells. V. A DNA triplex formed between a 28 base-pair DNA dumbbell substrate and a 16 base linear single strand.

Paner TM, Gallo FJ, Doktycz MJ, Benight AS.

Biopolymers. 1993 Dec;33(12):1779-89.

PMID:
8268406
[PubMed - indexed for MEDLINE]

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