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Similar articles for PubMed (Select 20840771)

1.

Implementation of exon arrays: alternative splicing during T-cell proliferation as determined by whole genome analysis.

Whistler T, Chiang CF, Lonergan W, Hollier M, Unger ER.

BMC Genomics. 2010 Sep 14;11:496. doi: 10.1186/1471-2164-11-496.

2.

Gene expression and isoform variation analysis using Affymetrix Exon Arrays.

Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.

BMC Genomics. 2008 Nov 7;9:529. doi: 10.1186/1471-2164-9-529. Erratum in: BMC Genomics. 2009 Mar 23;10. doi: 10.1186/1471-2164-10-121.

3.

Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.

Ha KCh, Coulombe-Huntington J, Majewski J.

BMC Genomics. 2009 Nov 12;10:519. doi: 10.1186/1471-2164-10-519.

4.

Transcriptome profiling and sequencing of differentiated human hematopoietic stem cells reveal lineage-specific expression and alternative splicing of genes.

Liu P, Barb J, Woodhouse K, Taylor JG 6th, Munson PJ, Raghavachari N.

Physiol Genomics. 2011 Oct 20;43(20):1117-34. doi: 10.1152/physiolgenomics.00099.2011. Epub 2011 Aug 9.

5.

Using an exon microarray to identify a global profile of gene expression and alternative splicing in K562 cells exposed to sodium valproate.

Zhang XZ, Yin AH, Zhu XY, Ding Q, Wang CH, Chen YX.

Oncol Rep. 2012 Apr;27(4):1258-65. doi: 10.3892/or.2011.1601. Epub 2011 Dec 21.

6.

A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease.

Raghavachari N, Barb J, Yang Y, Liu P, Woodhouse K, Levy D, O'Donnell CJ, Munson PJ, Kato GJ.

BMC Med Genomics. 2012 Jun 29;5:28. doi: 10.1186/1755-8794-5-28.

7.

A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST Arrays.

Yoshida R, Numata K, Imoto S, Nagasaki M, Doi A, Ueno K, Miyano S.

Genome Inform. 2006;17(1):88-99.

PMID:
17503359
8.

Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.

BMC Genomics. 2006 Dec 27;7:325.

9.

Exon-level transcriptome profiling in murine breast cancer reveals splicing changes specific to tumors with different metastatic abilities.

Bemmo A, Dias C, Rose AA, Russo C, Siegel P, Majewski J.

PLoS One. 2010 Aug 6;5(8):e11981. doi: 10.1371/journal.pone.0011981.

10.

A cross-platform comparison of genome-wide expression changes of laser microdissected lung tissue of C-Raf transgenic mice using 3'IVT and exon array.

Londhe KB, Borlak J.

PLoS One. 2012;7(7):e40778. doi: 10.1371/journal.pone.0040778. Epub 2012 Jul 16. Erratum in: PLoS One. 2012;7(10). doi:10.1371/annotation/57bb672d-dd2f-4754-90ca-8575c1fd8903.

11.

Transcription and splicing regulation in human umbilical vein endothelial cells under hypoxic stress conditions by exon array.

Hang X, Li P, Li Z, Qu W, Yu Y, Li H, Shen Z, Zheng H, Gao Y, Wu Y, Deng M, Sun Z, Zhang C.

BMC Genomics. 2009 Mar 25;10:126. doi: 10.1186/1471-2164-10-126.

12.

Gene Array Analyzer: alternative usage of gene arrays to study alternative splicing events.

Gellert P, Teranishi M, Jenniches K, De Gaspari P, John D, Kreymborg Kg, Braun T, Uchida S.

Nucleic Acids Res. 2012 Mar;40(6):2414-25. doi: 10.1093/nar/gkr1110. Epub 2011 Nov 28.

13.

Genome-wide analysis of immune activation in human T and B cells reveals distinct classes of alternatively spliced genes.

Grigoryev YA, Kurian SM, Nakorchevskiy AA, Burke JP, Campbell D, Head SR, Deng J, Kantor AB, Yates JR 3rd, Salomon DR.

PLoS One. 2009 Nov 19;4(11):e7906. doi: 10.1371/journal.pone.0007906.

14.

Expression map of the human exome in CD34+ cells and blood cells: increased alternative splicing in cell motility and immune response genes.

Tondeur S, Pangault C, Le Carrour T, Lannay Y, Benmahdi R, Cubizolle A, Assou S, Pantesco V, Klein B, Hamamah S, Schved JF, Fest T, De Vos J.

PLoS One. 2010 Feb 1;5(2):e8990. doi: 10.1371/journal.pone.0008990.

15.

Determination of alternate splicing events using the Affymetrix Exon 1.0 ST arrays.

Subbaram S, Kuentzel M, Frank D, Dipersio CM, Chittur SV.

Methods Mol Biol. 2010;632:63-72. doi: 10.1007/978-1-60761-663-4_4.

PMID:
20217571
16.

SplicerEX: a tool for the automated detection and classification of mRNA changes from conventional and splice-sensitive microarray expression data.

Robinson TJ, Forte E, Salinas RE, Puri S, Marengo M, Garcia-Blanco MA, Luftig MA.

RNA. 2012 Aug;18(8):1435-45. doi: 10.1261/rna.033621.112. Epub 2012 Jun 26.

17.

High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity.

Zhou W, Calciano MA, Jordan H, Brenner M, Johnson S, Wu D, Lei L, Pallares D, Beurdeley P, Rouet F, Gill PS, Bracco L, Soucaille C, Einstein R.

BMC Genet. 2009 Oct 5;10:63. doi: 10.1186/1471-2156-10-63.

18.

Exon-based clustering of murine breast tumor transcriptomes reveals alternative exons whose expression is associated with metastasis.

Dutertre M, Lacroix-Triki M, Driouch K, de la Grange P, Gratadou L, Beck S, Millevoi S, Tazi J, Lidereau R, Vagner S, Auboeuf D.

Cancer Res. 2010 Feb 1;70(3):896-905. doi: 10.1158/0008-5472.CAN-09-2703. Epub 2010 Jan 26.

19.

Exon array analysis using re-defined probe sets results in reliable identification of alternatively spliced genes in non-small cell lung cancer.

Langer W, Sohler F, Leder G, Beckmann G, Seidel H, Gröne J, Hummel M, Sommer A.

BMC Genomics. 2010 Nov 30;11:676. doi: 10.1186/1471-2164-11-676.

20.

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling.

Bradford JR, Hey Y, Yates T, Li Y, Pepper SD, Miller CJ.

BMC Genomics. 2010 May 5;11:282. doi: 10.1186/1471-2164-11-282.

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