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Results: 1 to 20 of 107

Similar articles for PubMed (Select 20838431)

1.

Adding a little reality to building ontologies for biology.

Lord P, Stevens R.

PLoS One. 2010 Sep 3;5(9):e12258. doi: 10.1371/journal.pone.0012258.

2.

SysBioMed report: advancing systems biology for medical applications.

Wolkenhauer O, Fell D, De Meyts P, Blüthgen N, Herzel H, Le Novère N, Höfer T, Schürrle K, van Leeuwen I.

IET Syst Biol. 2009 May;3(3):131-6. doi: 10.1049/iet-syb.2009.0005.

PMID:
19449974
3.

Evolutionary characters, phenotypes and ontologies: curating data from the systematic biology literature.

Dahdul WM, Balhoff JP, Engeman J, Grande T, Hilton EJ, Kothari C, Lapp H, Lundberg JG, Midford PE, Vision TJ, Westerfield M, Mabee PM.

PLoS One. 2010 May 20;5(5):e10708. doi: 10.1371/journal.pone.0010708.

4.

Modelling biological complexity: a physical scientist's perspective.

Coveney PV, Fowler PW.

J R Soc Interface. 2005 Sep 22;2(4):267-80. Review.

5.

A top-level ontology of functions and its application in the Open Biomedical Ontologies.

Burek P, Hoehndorf R, Loebe F, Visagie J, Herre H, Kelso J.

Bioinformatics. 2006 Jul 15;22(14):e66-73.

6.
7.

Integrating systems biology models and biomedical ontologies.

Hoehndorf R, Dumontier M, Gennari JH, Wimalaratne S, de Bono B, Cook DL, Gkoutos GV.

BMC Syst Biol. 2011 Aug 11;5:124. doi: 10.1186/1752-0509-5-124.

8.

Biomedical ontologies: toward scientific debate.

Maojo V, Crespo J, García-Remesal M, de la Iglesia D, Perez-Rey D, Kulikowski C.

Methods Inf Med. 2011;50(3):203-16. doi: 10.3414/ME10-05-0004. Epub 2011 Mar 21.

PMID:
21431244
9.
10.

Ontology-based knowledge representation for bioinformatics.

Stevens R, Goble CA, Bechhofer S.

Brief Bioinform. 2000 Nov;1(4):398-414. Review.

11.

Are the current ontologies in biology good ontologies?

Soldatova LN, King RD.

Nat Biotechnol. 2005 Sep;23(9):1095-8.

PMID:
16151402
12.

The layer-oriented approach to declarative languages for biological modeling.

Raikov I, De Schutter E.

PLoS Comput Biol. 2012;8(5):e1002521. doi: 10.1371/journal.pcbi.1002521. Epub 2012 May 17.

13.

Understanding diseases by mouse click: the promise and potential of computational approaches in Systems Biology.

Klauschen F, Angermann BR, Meier-Schellersheim M.

Clin Exp Immunol. 2007 Sep;149(3):424-9. Epub 2007 Jul 30. Review.

14.

Proceedings of the Second Workshop on Theory meets Industry (Erwin-Schrödinger-Institute (ESI), Vienna, Austria, 12-14 June 2007).

Hafner J.

J Phys Condens Matter. 2008 Feb 13;20(6):060301. doi: 10.1088/0953-8984/20/06/060301. Epub 2008 Jan 24.

PMID:
21693862
15.

Building a bioinformatics ontology using OIL.

Stevens R, Goble C, Horrocks I, Bechhofer S.

IEEE Trans Inf Technol Biomed. 2002 Jun;6(2):135-41.

PMID:
12075668
16.

Beyond the data deluge: data integration and bio-ontologies.

Blake JA, Bult CJ.

J Biomed Inform. 2006 Jun;39(3):314-20. Epub 2006 Feb 21.

17.

Mathematical formalisms based on approximated kinetic representations for modeling genetic and metabolic pathways.

Alves R, Vilaprinyo E, Hernádez-Bermejo B, Sorribas A.

Biotechnol Genet Eng Rev. 2008;25:1-40. Review.

PMID:
21412348
18.

Accommodating ontologies to biological reality--top-level categories of cumulative-constitutively organized material entities.

Vogt L, Grobe P, Quast B, Bartolomaeus T.

PLoS One. 2012;7(1):e30004. doi: 10.1371/journal.pone.0030004. Epub 2012 Jan 9.

19.

A review of standards for data exchange within systems biology.

Strömbäck L, Hall D, Lambrix P.

Proteomics. 2007 Mar;7(6):857-67. Review.

PMID:
17370264
20.

Multi-scale modelling and simulation in systems biology.

Dada JO, Mendes P.

Integr Biol (Camb). 2011 Feb;3(2):86-96. doi: 10.1039/c0ib00075b. Epub 2011 Jan 6. Review.

PMID:
21212881
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