Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 304

1.

The missing graphical user interface for genomics.

Schatz MC.

Genome Biol. 2010;11(8):128. doi: 10.1186/gb-2010-11-8-128. Epub 2010 Aug 25.

2.

Making whole genome multiple alignments usable for biologists.

Blankenberg D, Taylor J, Nekrutenko A; Galaxy Team.

Bioinformatics. 2011 Sep 1;27(17):2426-8. doi: 10.1093/bioinformatics/btr398. Epub 2011 Jul 19.

3.

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.

Goecks J, Nekrutenko A, Taylor J; Galaxy Team.

Genome Biol. 2010;11(8):R86. doi: 10.1186/gb-2010-11-8-r86. Epub 2010 Aug 25.

4.

MBEToolbox: a MATLAB toolbox for sequence data analysis in molecular biology and evolution.

Cai JJ, Smith DK, Xia X, Yuen KY.

BMC Bioinformatics. 2005 Mar 22;6:64.

5.

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.

6.

VisRseq: R-based visual framework for analysis of sequencing data.

Younesy H, Möller T, Lorincz MC, Karimi MM, Jones SJ.

BMC Bioinformatics. 2015;16 Suppl 11:S2. doi: 10.1186/1471-2105-16-S11-S2. Epub 2015 Aug 13.

7.

BioBlend.objects: metacomputing with Galaxy.

Leo S, Pireddu L, Cuccuru G, Lianas L, Soranzo N, Afgan E, Zanetti G.

Bioinformatics. 2014 Oct;30(19):2816-7. doi: 10.1093/bioinformatics/btu386. Epub 2014 Jun 12.

8.

arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays.

Menten B, Pattyn F, De Preter K, Robbrecht P, Michels E, Buysse K, Mortier G, De Paepe A, van Vooren S, Vermeesch J, Moreau Y, De Moor B, Vermeulen S, Speleman F, Vandesompele J.

BMC Bioinformatics. 2005 May 23;6:124.

9.

CGHPRO -- a comprehensive data analysis tool for array CGH.

Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

BMC Bioinformatics. 2005 Apr 5;6:85.

10.

Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system.

Oakley TH, Alexandrou MA, Ngo R, Pankey MS, Churchill CK, Chen W, Lopker KB.

BMC Bioinformatics. 2014 Jul 2;15:230. doi: 10.1186/1471-2105-15-230.

11.

ballaxy: web services for structural bioinformatics.

Hildebrandt AK, Stöckel D, Fischer NM, de la Garza L, Krüger J, Nickels S, Röttig M, Schärfe C, Schumann M, Thiel P, Lenhof HP, Kohlbacher O, Hildebrandt A.

Bioinformatics. 2015 Jan 1;31(1):121-2. doi: 10.1093/bioinformatics/btu574. Epub 2014 Sep 2.

12.

CREDO: a web-based tool for computational detection of conserved sequence motifs in noncoding sequences.

Hindemitt T, Mayer KF.

Bioinformatics. 2005 Dec 1;21(23):4304-6. Epub 2005 Oct 4.

13.

Ergatis: a web interface and scalable software system for bioinformatics workflows.

Orvis J, Crabtree J, Galens K, Gussman A, Inman JM, Lee E, Nampally S, Riley D, Sundaram JP, Felix V, Whitty B, Mahurkar A, Wortman J, White O, Angiuoli SV.

Bioinformatics. 2010 Jun 15;26(12):1488-92. doi: 10.1093/bioinformatics/btq167. Epub 2010 Apr 22.

14.

IslandViewer: an integrated interface for computational identification and visualization of genomic islands.

Langille MG, Brinkman FS.

Bioinformatics. 2009 Mar 1;25(5):664-5. doi: 10.1093/bioinformatics/btp030. Epub 2009 Jan 16.

15.

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons.

Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA.

BMC Genomics. 2011 Aug 8;12:402. doi: 10.1186/1471-2164-12-402.

16.

Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API.

Kono N, Arakawa K, Ogawa R, Kido N, Oshita K, Ikegami K, Tamaki S, Tomita M.

PLoS One. 2009 Nov 11;4(11):e7710. doi: 10.1371/journal.pone.0007710.

17.
18.

Alkahest NuclearBLAST : a user-friendly BLAST management and analysis system.

Diener SE, Houfek TD, Kalat SE, Windham DE, Burke M, Opperman C, Dean RA.

BMC Bioinformatics. 2005 Jun 15;6:147.

19.

Genomics Virtual Laboratory: A Practical Bioinformatics Workbench for the Cloud.

Afgan E, Sloggett C, Goonasekera N, Makunin I, Benson D, Crowe M, Gladman S, Kowsar Y, Pheasant M, Horst R, Lonie A.

PLoS One. 2015 Oct 26;10(10):e0140829. doi: 10.1371/journal.pone.0140829. eCollection 2015.

20.

WebArray: an online platform for microarray data analysis.

Xia X, McClelland M, Wang Y.

BMC Bioinformatics. 2005 Dec 21;6:306.

Items per page

Supplemental Content

Write to the Help Desk