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Results: 1 to 20 of 101

1.

Conformational control of thymine photodimerization in single-strand and duplex DNA containing locked nucleic acid TT steps.

Hariharan M, McCullagh M, Schatz GC, Lewis FD.

J Am Chem Soc. 2010 Sep 22;132(37):12856-8. doi: 10.1021/ja106203q. Erratum in: J Am Chem Soc. 2010 Nov 10;132(44):15831.

PMID:
20735128
[PubMed - indexed for MEDLINE]
2.

Electron donor-acceptor interactions with flanking purines influence the efficiency of thymine photodimerization.

Pan Z, Hariharan M, Arkin JD, Jalilov AS, McCullagh M, Schatz GC, Lewis FD.

J Am Chem Soc. 2011 Dec 28;133(51):20793-8. doi: 10.1021/ja205460f. Epub 2011 Dec 2. Erratum in: J Am Chem Soc. 2012 Feb 22;134(7):3611.

PMID:
22032333
[PubMed - indexed for MEDLINE]
3.

Context-dependent photodimerization in isolated thymine-thymine steps in DNA.

Hariharan M, Lewis FD.

J Am Chem Soc. 2008 Sep 10;130(36):11870-1. doi: 10.1021/ja804950j. Epub 2008 Aug 15.

PMID:
18702486
[PubMed - indexed for MEDLINE]
4.

Structure and dynamics of poly(T) single-strand DNA: implications toward CPD formation.

Johnson AT, Wiest O.

J Phys Chem B. 2007 Dec 27;111(51):14398-404. Epub 2007 Dec 6.

PMID:
18052367
[PubMed - indexed for MEDLINE]
5.

Conformational control of TT dimerization in DNA conjugates. A molecular dynamics study.

McCullagh M, Hariharan M, Lewis FD, Markovitsi D, Douki T, Schatz GC.

J Phys Chem B. 2010 Apr 22;114(15):5215-21. doi: 10.1021/jp100983t.

PMID:
20307059
[PubMed - indexed for MEDLINE]
6.

The conformations of locked nucleic acids (LNA).

Petersen M, Nielsen CB, Nielsen KE, Jensen GA, Bondensgaard K, Singh SK, Rajwanshi VK, Koshkin AA, Dahl BM, Wengel J, Jacobsen JP.

J Mol Recognit. 2000 Jan-Feb;13(1):44-53.

PMID:
10679896
[PubMed - indexed for MEDLINE]
7.

Targeting of single-stranded DNA and RNA containing adjacent pyrimidine and purine tracts by triple helix formation with circular and clamp oligonucleotides.

Maksimenko AV, Volkov EM, Bertrand JR, Porumb H, Malvy C, Shabarova ZA, Gottikh MB.

Eur J Biochem. 2000 Jun;267(12):3592-603.

PMID:
10848976
[PubMed - indexed for MEDLINE]
Free Article
8.

Investigation of ferrocenyl carbodiimide (FCDI) in the modification reaction of nucleic acids.

Mukumoto K, Nojima T, Takenaka S.

Nucleic Acids Symp Ser (Oxf). 2005;(49):231-2.

PMID:
17150718
[PubMed - indexed for MEDLINE]
Free Article
9.

Parallel RNA-strand recognition by 2'-amino-beta-L-LNA.

Kumar TS, Ostergaard ME, Sharma PK, Nielsen P, Wengel J, Hrdlicka PJ.

Bioorg Med Chem Lett. 2009 May 1;19(9):2396-9. doi: 10.1016/j.bmcl.2009.03.079. Epub 2009 Mar 24.

PMID:
19356930
[PubMed - indexed for MEDLINE]
10.

Synthetic nucleic acid secondary structures containing the four stereoisomers of 1,4-bis(thymine-1-yl)butane-2,3-diol.

Christensen MS, Bond AD, Nielsen P.

Org Biomol Chem. 2008 Jan 7;6(1):81-91. Epub 2007 Nov 7.

PMID:
18075652
[PubMed - indexed for MEDLINE]
11.

Quinazoline-2,4(1H,3H)-dione as a substitute for thymine in triple-helix forming oligonucleotides: a reassessment.

Michel J, Toulmé JJ, Vercauteren J, Moreau S.

Nucleic Acids Res. 1996 Mar 15;24(6):1127-35.

PMID:
8604348
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Stabilization by extra-helical thymines of a DNA duplex with Hoogsteen base pairs.

Pous J, Urpí L, Subirana JA, Gouyette C, Navaza J, Campos JL.

J Am Chem Soc. 2008 May 28;130(21):6755-60. doi: 10.1021/ja078022+. Epub 2008 May 1.

PMID:
18447354
[PubMed - indexed for MEDLINE]
13.

Reactivity of thymine doublet in single strand DNA with osmium reagent.

Nomura A, Okamoto A.

Nucleic Acids Symp Ser (Oxf). 2008;(52):433-4. doi: 10.1093/nass/nrn220.

PMID:
18776439
[PubMed - indexed for MEDLINE]
Free Article
14.

Structural study of DNA duplexes containing the (6-4) photoproduct by fluorescence resonance energy transfer.

Mizukoshi T, Kodama TS, Fujiwara Y, Furuno T, Nakanishi M, Iwai S.

Nucleic Acids Res. 2001 Dec 15;29(24):4948-54.

PMID:
11812824
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Solution structure of an LNA hybridized to DNA: NMR study of the d(CT(L)GCT(L)T(L)CT(L)GC):d(GCAGAAGCAG) duplex containing four locked nucleotides.

Nielsen KE, Singh SK, Wengel J, Jacobsen JP.

Bioconjug Chem. 2000 Mar-Apr;11(2):228-38.

PMID:
10725100
[PubMed - indexed for MEDLINE]
16.
17.

Hydration effects on the duplex stability of phosphoramidate DNA-RNA oligomers.

Barsky D, Colvin ME, Zon G, Gryaznov SM.

Nucleic Acids Res. 1997 Feb 15;25(4):830-5.

PMID:
9016634
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The structure of LNA:DNA hybrids from molecular dynamics simulations: the effect of locked nucleotides.

Ivanova A, Rösch N.

J Phys Chem A. 2007 Sep 27;111(38):9307-19. Epub 2007 Aug 25.

PMID:
17718546
[PubMed - indexed for MEDLINE]
19.

Methylphosphonate LNA: a locked nucleic acid with a methylphosphonate linkage.

Lauritsen A, Dahl BM, Dahl O, Vester B, Wengel J.

Bioorg Med Chem Lett. 2003 Jan 20;13(2):253-6.

PMID:
12482433
[PubMed - indexed for MEDLINE]
20.

HIV-1 nucleocapsid protein as a nucleic acid chaperone: spectroscopic study of its helix-destabilizing properties, structural binding specificity, and annealing activity.

Urbaneja MA, Wu M, Casas-Finet JR, Karpel RL.

J Mol Biol. 2002 May 3;318(3):749-64.

PMID:
12054820
[PubMed - indexed for MEDLINE]

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