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Similar articles for PubMed (Select 20712863)

1.

Integration of metabolic databases for the reconstruction of genome-scale metabolic networks.

Radrich K, Tsuruoka Y, Dobson P, Gevorgyan A, Swainston N, Baart G, Schwartz JM.

BMC Syst Biol. 2010 Aug 16;4:114. doi: 10.1186/1752-0509-4-114.

2.

MrBac: a web server for draft metabolic network reconstructions for bacteria.

Liao YC, Chen JC, Tsai MH, Tang YH, Chen FC, Hsiung CA.

Bioeng Bugs. 2011 Sep-Oct;2(5):284-7. doi: 10.4161/bbug.2.5.16113. Epub 2011 Sep 1.

3.

Reconciliation of metabolites and biochemical reactions for metabolic networks.

Bernard T, Bridge A, Morgat A, Moretti S, Xenarios I, Pagni M.

Brief Bioinform. 2014 Jan;15(1):123-35. doi: 10.1093/bib/bbs058. Epub 2012 Nov 19. Review.

4.

BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions.

Schellenberger J, Park JO, Conrad TM, Palsson BØ.

BMC Bioinformatics. 2010 Apr 29;11:213. doi: 10.1186/1471-2105-11-213.

5.

Accelerating the reconstruction of genome-scale metabolic networks.

Notebaart RA, van Enckevort FH, Francke C, Siezen RJ, Teusink B.

BMC Bioinformatics. 2006 Jun 13;7:296.

6.

AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis.

de Oliveira Dal'Molin CG, Quek LE, Palfreyman RW, Brumbley SM, Nielsen LK.

Plant Physiol. 2010 Feb;152(2):579-89. doi: 10.1104/pp.109.148817. Epub 2009 Dec 31.

7.

Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis.

Oberhardt MA, Puchałka J, Martins dos Santos VA, Papin JA.

PLoS Comput Biol. 2011 Mar;7(3):e1001116. doi: 10.1371/journal.pcbi.1001116. Epub 2011 Mar 31.

8.

Software platforms to facilitate reconstructing genome-scale metabolic networks.

Hamilton JJ, Reed JL.

Environ Microbiol. 2014 Jan;16(1):49-59. doi: 10.1111/1462-2920.12312. Epub 2013 Nov 18. Review.

PMID:
24148076
9.

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory.

Nogales J, Palsson BØ, Thiele I.

BMC Syst Biol. 2008 Sep 16;2:79. doi: 10.1186/1752-0509-2-79.

10.

AlgaGEM--a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome.

Dal'Molin CG, Quek LE, Palfreyman RW, Nielsen LK.

BMC Genomics. 2011 Dec 22;12 Suppl 4:S5. doi: 10.1186/1471-2164-12-S4-S5. Epub 2011 Dec 22.

11.

[Progress in genome-scale metabolic network: a review].

Wang H, Ma H, Zhao X.

Sheng Wu Gong Cheng Xue Bao. 2010 Oct;26(10):1340-8. Review. Chinese.

PMID:
21218620
12.

Genome-scale metabolic models: reconstruction and analysis.

Baart GJ, Martens DE.

Methods Mol Biol. 2012;799:107-26. doi: 10.1007/978-1-61779-346-2_7.

PMID:
21993642
13.

Genome-scale models of bacterial metabolism: reconstruction and applications.

Durot M, Bourguignon PY, Schachter V.

FEMS Microbiol Rev. 2009 Jan;33(1):164-90. doi: 10.1111/j.1574-6976.2008.00146.x. Epub 2008 Dec 3. Review.

14.

Reconstruction of metabolic pathways for the cattle genome.

Seo S, Lewin HA.

BMC Syst Biol. 2009 Mar 12;3:33. doi: 10.1186/1752-0509-3-33.

15.
16.

Toward the automated generation of genome-scale metabolic networks in the SEED.

DeJongh M, Formsma K, Boillot P, Gould J, Rycenga M, Best A.

BMC Bioinformatics. 2007 Apr 26;8:139.

17.

An extended bioreaction database that significantly improves reconstruction and analysis of genome-scale metabolic networks.

Stelzer M, Sun J, Kamphans T, Fekete SP, Zeng AP.

Integr Biol (Camb). 2011 Nov;3(11):1071-86. doi: 10.1039/c1ib00008j. Epub 2011 Sep 27.

PMID:
21952610
18.

Plant genome-scale metabolic reconstruction and modelling.

de Oliveira Dal'Molin CG, Nielsen LK.

Curr Opin Biotechnol. 2013 Apr;24(2):271-7. doi: 10.1016/j.copbio.2012.08.007. Epub 2012 Sep 1. Review.

PMID:
22947602
19.

Critical assessment of human metabolic pathway databases: a stepping stone for future integration.

Stobbe MD, Houten SM, Jansen GA, van Kampen AH, Moerland PD.

BMC Syst Biol. 2011 Oct 14;5:165. doi: 10.1186/1752-0509-5-165.

20.

Recent advances in the reconstruction of metabolic models and integration of omics data.

Saha R, Chowdhury A, Maranas CD.

Curr Opin Biotechnol. 2014 Oct;29:39-45. doi: 10.1016/j.copbio.2014.02.011. Epub 2014 Mar 12. Review.

PMID:
24632194
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