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Results: 1 to 20 of 86

1.

Analysis of intra-genomic GC content homogeneity within prokaryotes.

Bohlin J, Snipen L, Hardy SP, Kristoffersen AB, Lagesen K, Dønsvik T, Skjerve E, Ussery DW.

BMC Genomics. 2010 Aug 6;11:464. doi: 10.1186/1471-2164-11-464.

PMID:
20691090
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The consequences of base pair composition biases for regulatory network organization in prokaryotes.

Cordero OX, Hogeweg P.

Mol Biol Evol. 2009 Oct;26(10):2171-3. doi: 10.1093/molbev/msp132. Epub 2009 Jun 30.

PMID:
19567917
[PubMed - indexed for MEDLINE]
Free Article
3.

Examination of genome homogeneity in prokaryotes using genomic signatures.

Bohlin J, Skjerve E.

PLoS One. 2009 Dec 2;4(12):e8113. doi: 10.1371/journal.pone.0008113.

PMID:
19956556
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

High guanine-cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes.

Hurst LD, Merchant AR.

Proc Biol Sci. 2001 Mar 7;268(1466):493-7.

PMID:
11296861
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Amino acid usage is asymmetrically biased in AT- and GC-rich microbial genomes.

Bohlin J, Brynildsrud O, Vesth T, Skjerve E, Ussery DW.

PLoS One. 2013 Jul 26;8(7):e69878. doi: 10.1371/journal.pone.0069878. Print 2013.

PMID:
23922837
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Compositional dynamics of guanine and cytosine content in prokaryotic genomes.

Hu J, Zhao X, Zhang Z, Yu J.

Res Microbiol. 2007 May;158(4):363-70. Epub 2007 Mar 6.

PMID:
17449227
[PubMed - indexed for MEDLINE]
7.

Genomic GC content prediction in prokaryotes from a sample of genes.

Zavala A, Naya H, Romero H, Sabbia V, Piovani R, Musto H.

Gene. 2005 Sep 12;357(2):137-43.

PMID:
16125339
[PubMed - indexed for MEDLINE]
8.

On the correlation between genomic G+C content and optimal growth temperature in prokaryotes: data quality and confounding factors.

Wang HC, Susko E, Roger AJ.

Biochem Biophys Res Commun. 2006 Apr 14;342(3):681-4. Epub 2006 Feb 20. Review.

PMID:
16499870
[PubMed - indexed for MEDLINE]
9.

Cytosine usage modulates the correlation between CDS length and CG content in prokaryotic genomes.

Xia X, Wang H, Xie Z, Carullo M, Huang H, Hickey D.

Mol Biol Evol. 2006 Jul;23(7):1450-4. Epub 2006 May 10.

PMID:
16687416
[PubMed - indexed for MEDLINE]
Free Article
10.

Correlations between genomic GC levels and optimal growth temperatures in prokaryotes.

Musto H, Naya H, Zavala A, Romero H, Alvarez-Valín F, Bernardi G.

FEBS Lett. 2004 Aug 27;573(1-3):73-7.

PMID:
15327978
[PubMed - indexed for MEDLINE]
Free Article
11.

Aerobiosis increases the genomic guanine plus cytosine content (GC%) in prokaryotes.

Naya H, Romero H, Zavala A, Alvarez B, Musto H.

J Mol Evol. 2002 Sep;55(3):260-4.

PMID:
12187379
[PubMed - indexed for MEDLINE]
12.

Gene-centric association analysis for the correlation between the guanine-cytosine content levels and temperature range conditions of prokaryotic species.

Zheng H, Wu H.

BMC Bioinformatics. 2010 Dec 14;11 Suppl 11:S7. doi: 10.1186/1471-2105-11-S11-S7.

PMID:
21172057
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

On the origin of genomic adaptation at high temperature for prokaryotic organisms.

Basak S, Ghosh TC.

Biochem Biophys Res Commun. 2005 May 13;330(3):629-32. Review.

PMID:
15809043
[PubMed - indexed for MEDLINE]
14.

The GC-heterogeneity of teleost fishes.

Melodelima C, Gautier C.

BMC Genomics. 2008 Dec 24;9:632. doi: 10.1186/1471-2164-9-632.

PMID:
19108743
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

cDNA-based gene mapping and GC3 profiling in the soft-shelled turtle suggest a chromosomal size-dependent GC bias shared by sauropsids.

Kuraku S, Ishijima J, Nishida-Umehara C, Agata K, Kuratani S, Matsuda Y.

Chromosome Res. 2006;14(2):187-202. Epub 2006 Mar 17.

PMID:
16544192
[PubMed - indexed for MEDLINE]
16.

Genomic GC level, optimal growth temperature, and genome size in prokaryotes.

Musto H, Naya H, Zavala A, Romero H, Alvarez-Valín F, Bernardi G.

Biochem Biophys Res Commun. 2006 Aug 18;347(1):1-3. Epub 2006 Jun 19.

PMID:
16815305
[PubMed - indexed for MEDLINE]
17.

A universal compositional correlation among codon positions.

D'Onofrio G, Bernardi G.

Gene. 1992 Jan 2;110(1):81-8. Review.

PMID:
1544580
[PubMed - indexed for MEDLINE]
18.

Seven GC-rich microbial genomes adopt similar codon usage patterns regardless of their phylogenetic lineages.

Chen LL, Zhang CT.

Biochem Biophys Res Commun. 2003 Jun 20;306(1):310-7.

PMID:
12788106
[PubMed - indexed for MEDLINE]
19.

Investigations of oligonucleotide usage variance within and between prokaryotes.

Bohlin J, Skjerve E, Ussery DW.

PLoS Comput Biol. 2008 Apr 18;4(4):e1000057. doi: 10.1371/journal.pcbi.1000057. Erratum in: PLoS Comput Biol. 2009 Jul;5(7). doi: 10.1371/annotation/91dc9016-fc1e-495e-8828-22608c3efe44. PLoS Comput Biol. 2009 Jul;5(7). doi: 10.1371/annotation/45b4b21a-d0d1-40d2-8efd-c30b28baf1eb. PLoS Comput Biol. 2009 Jul;5(7). doi: 10.1371/annotation/4eb76620-9599-40f5-bb05-54f252e48f3b. PLoS Comput Biol. 2009 Jul;5(7). doi: 10.1371/annotation/27a4f12b-e6e6-4d19-bf53-09ce05dfe1b9. PLoS Comput Biol. 2009 Jul;5(7). doi: 10.1371/annotation/3785bc7c-4548-4554-8331-74cc68b8f356.

PMID:
18421372
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The evolution of genomic base composition in bacteria.

Haywood-Farmer E, Otto SP.

Evolution. 2003 Aug;57(8):1783-92.

PMID:
14503620
[PubMed - indexed for MEDLINE]

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