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Results: 1 to 20 of 99

Similar articles for PubMed (Select 20664641)

1.

Networking the nucleus.

Rajapakse I, Scalzo D, Tapscott SJ, Kosak ST, Groudine M.

Mol Syst Biol. 2010 Jul;6:395. doi: 10.1038/msb.2010.48. Review.

2.

Kolmogorov complexity of epithelial pattern formation: the role of regulatory network configuration.

Flann NS, Mohamadlou H, Podgorski GJ.

Biosystems. 2013 May;112(2):131-8. doi: 10.1016/j.biosystems.2013.03.005. Epub 2013 Mar 14.

PMID:
23499820
3.

Interlinked nonlinear subnetworks underlie the formation of robust cellular patterns in Arabidopsis epidermis: a dynamic spatial model.

Benítez M, Espinosa-Soto C, Padilla-Longoria P, Alvarez-Buylla ER.

BMC Syst Biol. 2008 Nov 17;2:98. doi: 10.1186/1752-0509-2-98.

4.

[Some principles in the organization of cellular signaling systems: is genome an instructor or a performer?].

Sverdlov ED.

Vestn Ross Akad Med Nauk. 2001;(10):8-18. Review. Russian.

PMID:
12216463
5.

Bridge and brick network motifs: identifying significant building blocks from complex biological systems.

Huang CY, Cheng CY, Sun CT.

Artif Intell Med. 2007 Oct;41(2):117-27. Epub 2007 Sep 7.

PMID:
17825540
6.

IRIS: a method for reverse engineering of regulatory relations in gene networks.

Morganella S, Zoppoli P, Ceccarelli M.

BMC Bioinformatics. 2009 Dec 23;10:444. doi: 10.1186/1471-2105-10-444.

7.

Chromosome topology in mammalian interphase nuclei.

Haaf T, Schmid M.

Exp Cell Res. 1991 Feb;192(2):325-32. Review.

PMID:
1988281
8.

Recent progress on the analysis of power-law features in complex cellular networks.

Nacher JC, Akutsu T.

Cell Biochem Biophys. 2007;49(1):37-47. Review.

PMID:
17873338
9.

Nuclear architecture supports integration of physiological regulatory signals for transcription of cell growth and tissue-specific genes during osteoblast differentiation.

Stein GS, van Wijnen AJ, Stein JL, Lian JB, Bidwell JP, Montecino M.

J Cell Biochem. 1994 May;55(1):4-15. Review.

PMID:
8083299
10.

Dynamic simulation of regulatory networks using SQUAD.

Di Cara A, Garg A, De Micheli G, Xenarios I, Mendoza L.

BMC Bioinformatics. 2007 Nov 26;8:462.

11.

Hybrid modeling of the crosstalk between signaling and transcriptional networks using ordinary differential equations and multi-valued logic.

Khan FM, Schmitz U, Nikolov S, Engelmann D, Pützer BM, Wolkenhauer O, Vera J.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt B):289-98. doi: 10.1016/j.bbapap.2013.05.007. Epub 2013 May 18.

PMID:
23692959
12.

Biological impacts and context of network theory.

Almaas E.

J Exp Biol. 2007 May;210(Pt 9):1548-58. Review.

13.

Implicit methods for qualitative modeling of gene regulatory networks.

Garg A, Mohanram K, De Micheli G, Xenarios I.

Methods Mol Biol. 2012;786:397-443. doi: 10.1007/978-1-61779-292-2_22.

PMID:
21938638
14.

Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network.

Krumsiek J, Marr C, Schroeder T, Theis FJ.

PLoS One. 2011;6(8):e22649. doi: 10.1371/journal.pone.0022649. Epub 2011 Aug 10.

15.

The emergence of lineage-specific chromosomal topologies from coordinate gene regulation.

Rajapakse I, Perlman MD, Scalzo D, Kooperberg C, Groudine M, Kosak ST.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6679-84. doi: 10.1073/pnas.0900986106. Epub 2009 Mar 10.

16.

Integrated module and gene-specific regulatory inference implicates upstream signaling networks.

Roy S, Lagree S, Hou Z, Thomson JA, Stewart R, Gasch AP.

PLoS Comput Biol. 2013;9(10):e1003252. doi: 10.1371/journal.pcbi.1003252. Epub 2013 Oct 17.

17.

Dynamic and structural constraints in signal propagation by regulatory networks.

Estrada J, Guantes R.

Mol Biosyst. 2013 Feb 2;9(2):268-84. doi: 10.1039/c2mb25243k. Epub 2012 Dec 6.

PMID:
23224050
18.

Gene expression complex networks: synthesis, identification, and analysis.

Lopes FM, Cesar RM, Costa Lda F.

J Comput Biol. 2011 Oct;18(10):1353-67. doi: 10.1089/cmb.2010.0118. Epub 2011 May 6.

PMID:
21548810
19.

Dynamical approaches to modeling developmental gene regulatory networks.

Geard N, Willadsen K.

Birth Defects Res C Embryo Today. 2009 Jun;87(2):131-42. doi: 10.1002/bdrc.20150. Review.

PMID:
19530129
20.

Empirical multiscale networks of cellular regulation.

de Bivort B, Huang S, Bar-Yam Y.

PLoS Comput Biol. 2007 Oct;3(10):1968-78.

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