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Results: 1 to 20 of 123

Similar articles for PubMed (Select 20656852)

1.

Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life.

Parfrey LW, Grant J, Tekle YI, Lasek-Nesselquist E, Morrison HG, Sogin ML, Patterson DJ, Katz LA.

Syst Biol. 2010 Oct;59(5):518-33. doi: 10.1093/sysbio/syq037. Epub 2010 Jul 23.

2.

Broadly sampled multigene trees of eukaryotes.

Yoon HS, Grant J, Tekle YI, Wu M, Chaon BC, Cole JC, Logsdon JM Jr, Patterson DJ, Bhattacharya D, Katz LA.

BMC Evol Biol. 2008 Jan 18;8:14. doi: 10.1186/1471-2148-8-14.

3.

Taxon-rich phylogenomic analyses resolve the eukaryotic tree of life and reveal the power of subsampling by sites.

Katz LA, Grant JR.

Syst Biol. 2015 May;64(3):406-15. doi: 10.1093/sysbio/syu126. Epub 2014 Dec 23.

PMID:
25540455
4.

Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates.

Hackett JD, Yoon HS, Li S, Reyes-Prieto A, Rümmele SE, Bhattacharya D.

Mol Biol Evol. 2007 Aug;24(8):1702-13. Epub 2007 May 7.

5.

The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids.

Nozaki H, Matsuzaki M, Takahara M, Misumi O, Kuroiwa H, Hasegawa M, Shin-i T, Kohara Y, Ogasawara N, Kuroiwa T.

J Mol Evol. 2003 Apr;56(4):485-97.

PMID:
12664168
6.

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups".

Hampl V, Hug L, Leigh JW, Dacks JB, Lang BF, Simpson AG, Roger AJ.

Proc Natl Acad Sci U S A. 2009 Mar 10;106(10):3859-64. doi: 10.1073/pnas.0807880106. Epub 2009 Feb 23.

7.

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists.

Burki F, Kudryavtsev A, Matz MV, Aglyamova GV, Bulman S, Fiers M, Keeling PJ, Pawlowski J.

BMC Evol Biol. 2010 Dec 2;10:377. doi: 10.1186/1471-2148-10-377.

8.

Phylogenetic placement of diverse amoebae inferred from multigene analyses and assessment of clade stability within 'Amoebozoa' upon removal of varying rate classes of SSU-rDNA.

Tekle YI, Grant J, Anderson OR, Nerad TA, Cole JC, Patterson DJ, Katz LA.

Mol Phylogenet Evol. 2008 Apr;47(1):339-52. doi: 10.1016/j.ympev.2007.11.015. Epub 2007 Dec 3.

PMID:
18180171
9.

Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata.

Moreira D, von der Heyden S, Bass D, López-García P, Chao E, Cavalier-Smith T.

Mol Phylogenet Evol. 2007 Jul;44(1):255-66. Epub 2006 Nov 15.

PMID:
17174576
10.

Identification of new molecular markers for assembling the eukaryotic tree of life.

Tekle YI, Grant JR, Kovner AM, Townsend JP, Katz LA.

Mol Phylogenet Evol. 2010 Jun;55(3):1177-82. doi: 10.1016/j.ympev.2010.03.010. Epub 2010 Mar 17.

PMID:
20302952
11.

Monophyly of Rhizaria and multigene phylogeny of unicellular bikonts.

Burki F, Pawlowski J.

Mol Biol Evol. 2006 Oct;23(10):1922-30. Epub 2006 Jul 7.

12.

Phylogenomics reshuffles the eukaryotic supergroups.

Burki F, Shalchian-Tabrizi K, Minge M, Skjaeveland A, Nikolaev SI, Jakobsen KS, Pawlowski J.

PLoS One. 2007 Aug 29;2(8):e790.

13.

Large-scale phylogenomic analyses reveal that two enigmatic protist lineages, telonemia and centroheliozoa, are related to photosynthetic chromalveolates.

Burki F, Inagaki Y, Bråte J, Archibald JM, Keeling PJ, Cavalier-Smith T, Sakaguchi M, Hashimoto T, Horak A, Kumar S, Klaveness D, Jakobsen KS, Pawlowski J, Shalchian-Tabrizi K.

Genome Biol Evol. 2009 Jul 27;1:231-8. doi: 10.1093/gbe/evp022.

14.

EEF2 analysis challenges the monophyly of Archaeplastida and Chromalveolata.

Kim E, Graham LE.

PLoS One. 2008 Jul 9;3(7):e2621. doi: 10.1371/journal.pone.0002621.

15.

Phylogeny of plastids based on cladistic analysis of gene loss inferred from complete plastid genome sequences.

Nozaki H, Ohta N, Matsuzaki M, Misumi O, Kuroiwa T.

J Mol Evol. 2003 Oct;57(4):377-82.

PMID:
14708571
16.

The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa.

Cavalier-Smith T.

Int J Syst Evol Microbiol. 2002 Mar;52(Pt 2):297-354. Review.

17.

From algae to angiosperms-inferring the phylogeny of green plants (Viridiplantae) from 360 plastid genomes.

Ruhfel BR, Gitzendanner MA, Soltis PS, Soltis DE, Burleigh JG.

BMC Evol Biol. 2014 Feb 17;14:23. doi: 10.1186/1471-2148-14-23.

18.

Evaluating support for the current classification of eukaryotic diversity.

Parfrey LW, Barbero E, Lasser E, Dunthorn M, Bhattacharya D, Patterson DJ, Katz LA.

PLoS Genet. 2006 Dec;2(12):e220. Epub 2006 Nov 13.

19.

Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence.

Regier JC, Shultz JW, Ganley AR, Hussey A, Shi D, Ball B, Zwick A, Stajich JE, Cummings MP, Martin JW, Cunningham CW.

Syst Biol. 2008 Dec;57(6):920-38. doi: 10.1080/10635150802570791.

PMID:
19085333
20.

Evolutionary relationships of apusomonads inferred from taxon-rich analyses of 6 nuclear encoded genes.

Kim E, Simpson AG, Graham LE.

Mol Biol Evol. 2006 Dec;23(12):2455-66. Epub 2006 Sep 18.

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