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Items: 1 to 20 of 158

1.

An MRI-based atlas and database of the developing mouse brain.

Chuang N, Mori S, Yamamoto A, Jiang H, Ye X, Xu X, Richards LJ, Nathans J, Miller MI, Toga AW, Sidman RL, Zhang J.

Neuroimage. 2011 Jan 1;54(1):80-9. doi: 10.1016/j.neuroimage.2010.07.043. Epub 2010 Jul 23.

2.

Magnetic resonance imaging and micro-computed tomography combined atlas of developing and adult mouse brains for stereotaxic surgery.

Aggarwal M, Zhang J, Miller MI, Sidman RL, Mori S.

Neuroscience. 2009 Sep 15;162(4):1339-50. doi: 10.1016/j.neuroscience.2009.05.070. Epub 2009 May 30.

3.

Human brain atlas for automated region of interest selection in quantitative susceptibility mapping: application to determine iron content in deep gray matter structures.

Lim IA, Faria AV, Li X, Hsu JT, Airan RD, Mori S, van Zijl PC.

Neuroimage. 2013 Nov 15;82:449-69. doi: 10.1016/j.neuroimage.2013.05.127. Epub 2013 Jun 12.

4.

Magnetic resonance imaging-based mouse brain atlas and its applications.

Aggarwal M, Zhang J, Mori S.

Methods Mol Biol. 2011;711:251-70. doi: 10.1007/978-1-61737-992-5_12.

PMID:
21279606
5.

In vivo high-resolution diffusion tensor imaging of the mouse brain.

Wu D, Xu J, McMahon MT, van Zijl PC, Mori S, Northington FJ, Zhang J.

Neuroimage. 2013 Dec;83:18-26. doi: 10.1016/j.neuroimage.2013.06.012. Epub 2013 Jun 12.

6.

New insights into the developing rabbit brain using diffusion tensor tractography and generalized q-sampling MRI.

Lim SY, Tyan YS, Chao YP, Nien FY, Weng JC.

PLoS One. 2015 Mar 23;10(3):e0119932. doi: 10.1371/journal.pone.0119932. eCollection 2015.

7.

A histology-based atlas of the C57BL/6J mouse brain deformably registered to in vivo MRI for localized radiation and surgical targeting.

Purger D, McNutt T, Achanta P, Quiñones-Hinojosa A, Wong J, Ford E.

Phys Med Biol. 2009 Dec 21;54(24):7315-27. doi: 10.1088/0031-9155/54/24/005. Epub 2009 Nov 20.

8.

Mapping postnatal mouse brain development with diffusion tensor microimaging.

Zhang J, Miller MI, Plachez C, Richards LJ, Yarowsky P, van Zijl P, Mori S.

Neuroimage. 2005 Jul 15;26(4):1042-51. Epub 2005 Apr 21.

PMID:
15961044
9.

Construction of a stereotaxic DTI atlas with full diffusion tensor information for studying white matter maturation from childhood to adolescence using tractography-based segmentations.

Verhoeven JS, Sage CA, Leemans A, Van Hecke W, Callaert D, Peeters R, De Cock P, Lagae L, Sunaert S.

Hum Brain Mapp. 2010 Mar;31(3):470-86. doi: 10.1002/hbm.20880.

PMID:
19957267
10.

Microscopic diffusion tensor atlas of the mouse brain.

Jiang Y, Johnson GA.

Neuroimage. 2011 Jun 1;56(3):1235-43. doi: 10.1016/j.neuroimage.2011.03.031. Epub 2011 Mar 16.

11.

Quantitative mouse brain phenotyping based on single and multispectral MR protocols.

Badea A, Gewalt S, Avants BB, Cook JJ, Johnson GA.

Neuroimage. 2012 Nov 15;63(3):1633-45. doi: 10.1016/j.neuroimage.2012.07.021. Epub 2012 Jul 23.

12.

Atlas-based analysis of neurodevelopment from infancy to adulthood using diffusion tensor imaging and applications for automated abnormality detection.

Faria AV, Zhang J, Oishi K, Li X, Jiang H, Akhter K, Hermoye L, Lee SK, Hoon A, Stashinko E, Miller MI, van Zijl PC, Mori S.

Neuroimage. 2010 Aug 15;52(2):415-28. doi: 10.1016/j.neuroimage.2010.04.238. Epub 2010 Apr 24.

13.

The SRI24 multichannel atlas of normal adult human brain structure.

Rohlfing T, Zahr NM, Sullivan EV, Pfefferbaum A.

Hum Brain Mapp. 2010 May;31(5):798-819. doi: 10.1002/hbm.20906.

14.

Feasibility of creating a high-resolution 3D diffusion tensor imaging based atlas of the human brainstem: a case study at 11.7 T.

Aggarwal M, Zhang J, Pletnikova O, Crain B, Troncoso J, Mori S.

Neuroimage. 2013 Jul 1;74:117-27. doi: 10.1016/j.neuroimage.2013.01.061. Epub 2013 Feb 4.

15.

In vivo quantitative whole-brain diffusion tensor imaging analysis of APP/PS1 transgenic mice using voxel-based and atlas-based methods.

Qin YY, Li MW, Zhang S, Zhang Y, Zhao LY, Lei H, Oishi K, Zhu WZ.

Neuroradiology. 2013 Aug;55(8):1027-38. doi: 10.1007/s00234-013-1195-0. Epub 2013 May 5.

PMID:
23644540
16.

A three-dimensional digital atlas database of the adult C57BL/6J mouse brain by magnetic resonance microscopy.

Ma Y, Hof PR, Grant SC, Blackband SJ, Bennett R, Slatest L, McGuigan MD, Benveniste H.

Neuroscience. 2005;135(4):1203-15. Epub 2005 Sep 13.

PMID:
16165303
17.

Validation of MRI-based 3D digital atlas registration with histological and autoradiographic volumes: an anatomofunctional transgenic mouse brain imaging study.

Lebenberg J, Hérard AS, Dubois A, Dauguet J, Frouin V, Dhenain M, Hantraye P, Delzescaux T.

Neuroimage. 2010 Jul 1;51(3):1037-46. doi: 10.1016/j.neuroimage.2010.03.014. Epub 2010 Mar 10.

PMID:
20226256
18.

White and gray matter development in human fetal, newborn and pediatric brains.

Huang H, Zhang J, Wakana S, Zhang W, Ren T, Richards LJ, Yarowsky P, Donohue P, Graham E, van Zijl PC, Mori S.

Neuroimage. 2006 Oct 15;33(1):27-38. Epub 2006 Aug 14.

PMID:
16905335
19.

Robust methods to create ex vivo minimum deformation atlases for brain mapping.

Janke AL, Ullmann JF.

Methods. 2015 Feb;73:18-26. doi: 10.1016/j.ymeth.2015.01.005. Epub 2015 Jan 22. Review.

PMID:
25620005
20.

AtlasGuide: software for stereotaxic guidance using 3D CT/MRI hybrid atlases of developing mouse brains.

Li X, Aggarwal M, Hsu J, Jiang H, Mori S.

J Neurosci Methods. 2013 Oct 30;220(1):75-84. doi: 10.1016/j.jneumeth.2013.08.017. Epub 2013 Aug 27.

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