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Results: 1 to 20 of 140

1.

Genome networks root the tree of life between prokaryotic domains.

Dagan T, Roettger M, Bryant D, Martin W.

Genome Biol Evol. 2010 Jul 12;2:379-92. doi: 10.1093/gbe/evq025.

PMID:
20624742
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification.

Cavalier-Smith T.

Int J Syst Evol Microbiol. 2002 Jan;52(Pt 1):7-76. Review.

PMID:
11837318
[PubMed - indexed for MEDLINE]
Free Article
3.

Genome trees constructed using five different approaches suggest new major bacterial clades.

Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

BMC Evol Biol. 2001 Oct 20;1:8.

PMID:
11734060
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution.

Dagan T, Artzy-Randrup Y, Martin W.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):10039-44. doi: 10.1073/pnas.0800679105. Epub 2008 Jul 16.

PMID:
18632554
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

An evolutionary network of genes present in the eukaryote common ancestor polls genomes on eukaryotic and mitochondrial origin.

Thiergart T, Landan G, Schenk M, Dagan T, Martin WF.

Genome Biol Evol. 2012;4(4):466-85. doi: 10.1093/gbe/evs018. Epub 2012 Feb 21.

PMID:
22355196
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

The natural evolutionary relationships among prokaryotes.

Gupta RS.

Crit Rev Microbiol. 2000;26(2):111-31. Review.

PMID:
10890353
[PubMed - indexed for MEDLINE]
7.
8.

Harvesting evolutionary signals in a forest of prokaryotic gene trees.

Schliep K, Lopez P, Lapointe FJ, Bapteste E.

Mol Biol Evol. 2011 Apr;28(4):1393-405. doi: 10.1093/molbev/msq323. Epub 2010 Dec 20.

PMID:
21172835
[PubMed - indexed for MEDLINE]
Free Article
9.

Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes.

Iwabe N, Kuma K, Hasegawa M, Osawa S, Miyata T.

Proc Natl Acad Sci U S A. 1989 Dec;86(23):9355-9.

PMID:
2531898
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Root of the universal tree of life based on ancient aminoacyl-tRNA synthetase gene duplications.

Brown JR, Doolittle WF.

Proc Natl Acad Sci U S A. 1995 Mar 28;92(7):2441-5.

PMID:
7708661
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Supertrees disentangle the chimerical origin of eukaryotic genomes.

Pisani D, Cotton JA, McInerney JO.

Mol Biol Evol. 2007 Aug;24(8):1752-60. Epub 2007 May 15.

PMID:
17504772
[PubMed - indexed for MEDLINE]
Free Article
12.
13.

Genomic and phylogenetic perspectives on the evolution of prokaryotes.

Brown JR.

Syst Biol. 2001 Aug;50(4):497-512. Review.

PMID:
12116649
[PubMed - indexed for MEDLINE]
14.

Prokaryotic evolution and the tree of life are two different things.

Bapteste E, O'Malley MA, Beiko RG, Ereshefsky M, Gogarten JP, Franklin-Hall L, Lapointe FJ, Dupré J, Dagan T, Boucher Y, Martin W.

Biol Direct. 2009 Sep 29;4:34. doi: 10.1186/1745-6150-4-34.

PMID:
19788731
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evidence for a new root of the tree of life.

Lake JA, Servin JA, Herbold CW, Skophammer RG.

Syst Biol. 2008 Dec;57(6):835-43. doi: 10.1080/10635150802555933.

PMID:
19085327
[PubMed - indexed for MEDLINE]
16.

Networks of gene sharing among 329 proteobacterial genomes reveal differences in lateral gene transfer frequency at different phylogenetic depths.

Kloesges T, Popa O, Martin W, Dagan T.

Mol Biol Evol. 2011 Feb;28(2):1057-74. doi: 10.1093/molbev/msq297. Epub 2010 Nov 8.

PMID:
21059789
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Homologs of eukaryotic Ras superfamily proteins in prokaryotes and their novel phylogenetic correlation with their eukaryotic analogs.

Dong JH, Wen JF, Tian HF.

Gene. 2007 Jul 1;396(1):116-24. Epub 2007 Mar 14.

PMID:
17449198
[PubMed - indexed for MEDLINE]
18.

On the origins of cells: a hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautotrophic prokaryotes, and from prokaryotes to nucleated cells.

Martin W, Russell MJ.

Philos Trans R Soc Lond B Biol Sci. 2003 Jan 29;358(1429):59-83; discussion 83-5.

PMID:
12594918
[PubMed - indexed for MEDLINE]
Free PMC Article
19.
20.

A genome phylogeny for mitochondria among alpha-proteobacteria and a predominantly eubacterial ancestry of yeast nuclear genes.

Esser C, Ahmadinejad N, Wiegand C, Rotte C, Sebastiani F, Gelius-Dietrich G, Henze K, Kretschmann E, Richly E, Leister D, Bryant D, Steel MA, Lockhart PJ, Penny D, Martin W.

Mol Biol Evol. 2004 Sep;21(9):1643-60. Epub 2004 May 21.

PMID:
15155797
[PubMed - indexed for MEDLINE]
Free Article

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