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Results: 1 to 20 of 98

1.

METAL: fast and efficient meta-analysis of genomewide association scans.

Willer CJ, Li Y, Abecasis GR.

Bioinformatics. 2010 Sep 1;26(17):2190-1. doi: 10.1093/bioinformatics/btq340. Epub 2010 Jul 8.

PMID:
20616382
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

RAREMETAL: fast and powerful meta-analysis for rare variants.

Feng S, Liu D, Zhan X, Wing MK, Abecasis GR.

Bioinformatics. 2014 Jun 3. pii: btu367. [Epub ahead of print]

PMID:
24894501
[PubMed - as supplied by publisher]
Free Article
3.

X-MATE: a flexible system for mapping short read data.

Wood DL, Xu Q, Pearson JV, Cloonan N, Grimmond SM.

Bioinformatics. 2011 Feb 15;27(4):580-1. doi: 10.1093/bioinformatics/btq698. Epub 2011 Jan 6.

PMID:
21216778
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

GENOME: a rapid coalescent-based whole genome simulator.

Liang L, Zöllner S, Abecasis GR.

Bioinformatics. 2007 Jun 15;23(12):1565-7. Epub 2007 Apr 25.

PMID:
17459963
[PubMed - indexed for MEDLINE]
Free Article
5.

LocusZoom: regional visualization of genome-wide association scan results.

Pruim RJ, Welch RP, Sanna S, Teslovich TM, Chines PS, Gliedt TP, Boehnke M, Abecasis GR, Willer CJ.

Bioinformatics. 2010 Sep 15;26(18):2336-7. doi: 10.1093/bioinformatics/btq419. Epub 2010 Jul 15.

PMID:
20634204
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

GWAMA: software for genome-wide association meta-analysis.

Mägi R, Morris AP.

BMC Bioinformatics. 2010 May 28;11:288. doi: 10.1186/1471-2105-11-288.

PMID:
20509871
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Libaffy: software for processing Affymetrix GeneChip data.

Eschrich SA, Hoerter AM.

Bioinformatics. 2007 Jun 15;23(12):1562-4. Epub 2007 Apr 26.

PMID:
17463032
[PubMed - indexed for MEDLINE]
Free Article
8.

MAVEN: a tool for visualization and functional analysis of genome-wide association results.

Narayanan K, Li J.

Bioinformatics. 2010 Jan 15;26(2):270-2. doi: 10.1093/bioinformatics/btp641. Epub 2009 Nov 17.

PMID:
19933166
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

GWAtoolbox: an R package for fast quality control and handling of genome-wide association studies meta-analysis data.

Fuchsberger C, Taliun D, Pramstaller PP, Pattaro C; CKDGen consortium.

Bioinformatics. 2012 Feb 1;28(3):444-5. doi: 10.1093/bioinformatics/btr679. Epub 2011 Dec 8.

PMID:
22155946
[PubMed - indexed for MEDLINE]
Free Article
10.

High-throughput analysis of epistasis in genome-wide association studies with BiForce.

Gyenesei A, Moody J, Semple CA, Haley CS, Wei WH.

Bioinformatics. 2012 Aug 1;28(15):1957-64. doi: 10.1093/bioinformatics/bts304. Epub 2012 May 21. Erratum in: Bioinformatics. 2013 Oct 15;29(20):2667-8.

PMID:
22618535
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks.

Gevorgyan A, Bushell ME, Avignone-Rossa C, Kierzek AM.

Bioinformatics. 2011 Feb 1;27(3):433-4. doi: 10.1093/bioinformatics/btq679. Epub 2010 Dec 9.

PMID:
21148545
[PubMed - indexed for MEDLINE]
Free Article
12.

GAPIT: genome association and prediction integrated tool.

Lipka AE, Tian F, Wang Q, Peiffer J, Li M, Bradbury PJ, Gore MA, Buckler ES, Zhang Z.

Bioinformatics. 2012 Sep 15;28(18):2397-9. Epub 2012 Jul 13.

PMID:
22796960
[PubMed - indexed for MEDLINE]
Free Article
13.

MASS: meta-analysis of score statistics for sequencing studies.

Tang ZZ, Lin DY.

Bioinformatics. 2013 Jul 15;29(14):1803-5. doi: 10.1093/bioinformatics/btt280. Epub 2013 May 21.

PMID:
23698861
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

BigWig and BigBed: enabling browsing of large distributed datasets.

Kent WJ, Zweig AS, Barber G, Hinrichs AS, Karolchik D.

Bioinformatics. 2010 Sep 1;26(17):2204-7. doi: 10.1093/bioinformatics/btq351. Epub 2010 Jul 17.

PMID:
20639541
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

GenomicTools: a computational platform for developing high-throughput analytics in genomics.

Tsirigos A, Haiminen N, Bilal E, Utro F.

Bioinformatics. 2012 Jan 15;28(2):282-3. doi: 10.1093/bioinformatics/btr646. Epub 2011 Nov 22.

PMID:
22113082
[PubMed - indexed for MEDLINE]
Free Article
16.

Utility library for structural bioinformatics.

Gront D, Kolinski A.

Bioinformatics. 2008 Feb 15;24(4):584-5. doi: 10.1093/bioinformatics/btm627. Epub 2008 Jan 28.

PMID:
18227118
[PubMed - indexed for MEDLINE]
Free Article
17.

Leveraging input and output structures for joint mapping of epistatic and marginal eQTLs.

Lee S, Xing EP.

Bioinformatics. 2012 Jun 15;28(12):i137-46. doi: 10.1093/bioinformatics/bts227.

PMID:
22689753
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

GRIMP: a web- and grid-based tool for high-speed analysis of large-scale genome-wide association using imputed data.

Estrada K, Abuseiris A, Grosveld FG, Uitterlinden AG, Knoch TA, Rivadeneira F.

Bioinformatics. 2009 Oct 15;25(20):2750-2. doi: 10.1093/bioinformatics/btp497. Epub 2009 Aug 21.

PMID:
19700477
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

SNPFile--a software library and file format for large scale association mapping and population genetics studies.

Nielsen J, Mailund T.

BMC Bioinformatics. 2008 Dec 8;9:526. doi: 10.1186/1471-2105-9-526.

PMID:
19063732
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context.

Martin O, Valsesia A, Telenti A, Xenarios I, Stevenson BJ.

Bioinformatics. 2009 Mar 1;25(5):662-3. doi: 10.1093/bioinformatics/btp017. Epub 2009 Jan 25.

PMID:
19168913
[PubMed - indexed for MEDLINE]
Free PMC Article

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