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20586484,21553125,20810122,16335977,22352882,19155017,16052619,10892737,16212403,17081071,17126347,17203954,18790130,14613209,19653698,17406433,15095358,17133622,17486657,16428136,20872635,9638941,9638948,18324794,19217112,15468157,21093389,18047273,21050830,18078946,16287040,15880631,19630030,10344259,19334764,15852344,17586515,12298089,18407620,17990248,16736452,16223239,16862620,18024247,12807359,17136763,18186601,17922513,16052618,18985660,20232878,16212420,18166008,23161168,18538972,20136094,16521170,18181248,18268500,16705653,20486690,17080482,12876682,21894976,23217299,18576677,9750124,14991690,19381606,20960129,20978983,20978982,21056019,20828166,20862731,25416231,21171180,17634592,20629331,22693117,21207296,22370273,21334484,20652868,21761829,26090583,22547356,20726833,22446077,26780156,19544033,21192026,22181661,24791979,26420021,22139698,20377267,24468393,25463202,16878704,20622334,21645657,23280970,20604508,21967672,22806461,19381604,22063562,22638973,21112057,21842911,20507259,10949134,20058162,20687565,20931617,20967768,23177629,20956095,21145408,20977879,22083820,25044505,21640699,21083080,19629955,28884851,21235272,21186571,22468925,20364248,16428137,23296529,21948410,20936781,16522850,21337587,25427280,21480673,21762652,24268478,19381597,30802218,22305892,21254131,21920827,23019167,20925058,21450299,18756023,21443167,17093322,22887945,22848049,22903711,20438121,16472533,21126090,20715787,22519621,21922499,21329886,24309213,15378691,20680600,25384746,19544022,21243509,18602503,23956148,22097777,15386632,21478059,25770620,26178575,12954165,25582721,15187292,15274142,12918978,21948424,21538879,20692224,22608437,20636094,23291530,24852634,20560667,21604121,22353030,23727007,22807358,22651994,21395231,22703540,20869420,20058171,21144814,22265547,33538041,27865782,21565151,20820636,28508367,31470587,23109362,21397697,23784971,21727046,19488709,21079196,21468939,16790857,23368288,26667816,14997480,19174304,22949036,20839112,28188524,21072359,22708679,22140069,21365759,23765616,15359724,23394071,21183296,21905222,20815006,20560054,24308638,23744580,27289300,19066860,22265542,14559145,23181269,20708053,24339214,21211243,21345746,21630450,24766658,24127731,20704860,21547738,22444574,19926301,20599557,21553124,24792008,21501013,23450663,27975212,22903721,20973639,21630454,20636075,22653788,22931122,31777090,21889634,26860395,23142974,24789497,20528263,21396361,20685463,20680589,22903706,15852343,18842605,26773578,22976027,21078288,20680593,22699869,11503205,24983324,22512078,22002805,32796012,19757418,23938773,21679113,18985661,23992420,21204470,24648088,15924634,33008399,28188523,22002698,27706672,22324799,22721709,23126408,23255229,20724092,15800970,17098721,16895580,26572051,30975097,21036361,23869483,20407941,21884835,23784626,22813215,22324309,17668194,26153614,28738076,11680889,11555863,31659904,29474761,26804737,23107750,28387652,21182196,20213695,34236853,23812881,21539947,26398423,28864145,20518575,32113117,24941313,27219663,18597515,23352451,19137096,22102289,31432411,16009011,20540563,21993643,21108643,19896566,22083821,19290621,14673797,28850952,21708264,27419900,24723515,22424378,24136523,28537741,15019019,30066193,21043438,17355127,22186714,22484678,21751360,26898204,21689998,24123299,23078852,23943505,25492091,28126229,19169877,27461358,23388677,24136534,30679045,23551181,20058173,26864288,12234320,29658936,20625782,23943586,29326070,24338207,21071520,26454001,16376900,16457602,19714884,21741946,21963592,26460278,21253868,22292822,20940630,23510028,26319803,28271630,25408455,28980277,15682463,33128761,25618759,23160936,21567688,20680605,23960722,19263575,22679624,27796761,28850891,22671763,20731415,31552626,26701646,25183224,23831156,27376408,24377746,20413071,21997354,21030408,26087967,11565800,14625866,19267670,30001383,25820734,21079928,20714501,31726477,17185767,23763332,28672066,18816081,22539313,21774219,27137514,23202415,23227887,24791988,22589193,23718750,23721421,25578509,24074297,20537905,31754045,27605470,17309095,21480662,16522859,22087661,29384680,18533743,20091422,19381576,10740855,29674058,29364169,23741028,23505226,22885790,23402265,10740846,23014190,26072732,23665639,24638115,15985654,21146488,24988083,26028250,20676634,31180188,24753479,19670903,25580831,18179165,31601107,22359915,32219766,25388121,27129779,27836619,26700038,12659732,16339992,12164700,27801520,28648079,31121981,12645891,36734599,25619855,23125154,24316520,32767647,24834482,24401389,24729313,24361471,23205614,26201256,34235669,29392697,30877672,22311769,28502008,19137106,21948403,36430380,30276754,18287772,21380605,26698226,20407956,33143964,23210603,17627934,17389470,23354175,23986405,20188221,17205601,23147817,24565320,23814469,16442611,12748937,26235080,15026003,18724670,29099648,23712570,22609191,31060584,26660081,33750040,24108683,23153793,18680313,28485144,25644705,25646822,15496171,25641854,25641928,24246022,23925556,22462784,20166582,30078316,16145578,21373832,23726079,26544763,10343397,20176153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Cloud-point extraction and delipidation of porcine brain proteins in combination with bottom-up mass spectrometry approaches for proteome analysis.

Shevchenko G, Sjödin MO, Malmström D, Wetterhall M, Bergquist J. Shevchenko G, et al. J Proteome Res. 2010 Aug 6;9(8):3903-11. doi: 10.1021/pr100116k. J Proteome Res. 2010. PMID: 20586484

Analysis of membrane and hydrophilic proteins simultaneously derived from the mouse brain using cloud-point extraction.

Wetterhall M, Shevchenko G, Artemenko K, Sjödin MO, Bergquist J. Wetterhall M, et al. Anal Bioanal Chem. 2011 Jul;400(9):2827-36. doi: 10.1007/s00216-011-5037-9. Epub 2011 May 7. Anal Bioanal Chem. 2011. PMID: 21553125

Protein- versus peptide fractionation in the first dimension of two-dimensional high-performance liquid chromatography-matrix-assisted laser desorption/ionization tandem mass spectrometry for qualitative proteome analysis of tissue samples.

Melchior K, Tholey A, Heisel S, Keller A, Lenhof HP, Meese E, Huber CG. Melchior K, et al. J Chromatogr A. 2010 Oct 1;1217(40):6159-68. doi: 10.1016/j.chroma.2010.07.044. Epub 2010 Jul 21. J Chromatogr A. 2010. PMID: 20810122

Profiling of myelin proteins by 2D-gel electrophoresis and multidimensional liquid chromatography coupled to MALDI TOF-TOF mass spectrometry.

Vanrobaeys F, Van Coster R, Dhondt G, Devreese B, Van Beeumen J. Vanrobaeys F, et al. J Proteome Res. 2005 Nov-Dec;4(6):2283-93. doi: 10.1021/pr050205c. J Proteome Res. 2005. PMID: 16335977

Comparison of extraction methods for the comprehensive analysis of mouse brain proteome using shotgun-based mass spectrometry.

Shevchenko G, Musunuri S, Wetterhall M, Bergquist J. Shevchenko G, et al. J Proteome Res. 2012 Apr 6;11(4):2441-51. doi: 10.1021/pr201169q. Epub 2012 Mar 7. J Proteome Res. 2012. PMID: 22352882

Surface modified capillary electrophoresis combined with in solution isoelectric focusing and MALDI-TOF/TOF MS: a gel-free multidimensional electrophoresis approach for proteomic profiling--exemplified on human follicular fluid.

Hanrieder J, Zuberovic A, Bergquist J. Hanrieder J, et al. J Chromatogr A. 2009 Apr 24;1216(17):3621-8. doi: 10.1016/j.chroma.2008.12.026. Epub 2008 Dec 24. J Chromatogr A. 2009. PMID: 19155017

Comparison of alternative analytical techniques for the characterisation of the human serum proteome in HUPO Plasma Proteome Project.

Li X, Gong Y, Wang Y, Wu S, Cai Y, He P, Lu Z, Ying W, Zhang Y, Jiao L, He H, Zhang Z, He F, Zhao X, Qian X. Li X, et al. Proteomics. 2005 Aug;5(13):3423-41. doi: 10.1002/pmic.200401226. Proteomics. 2005. PMID: 16052619

Identification of two-dimensionally separated human cerebrospinal fluid proteins by N-terminal sequencing, matrix-assisted laser desorption/ionization--mass spectrometry, nanoliquid chromatography-electrospray ionization-time of flight-mass spectrometry, and tandem mass spectrometry.

Raymackers J, Daniels A, De Brabandere V, Missiaen C, Dauwe M, Verhaert P, Vanmechelen E, Meheus L. Raymackers J, et al. Electrophoresis. 2000 Jun;21(11):2266-83. doi: 10.1002/1522-2683(20000601)21:11<2266::AID-ELPS2266>3.0.CO;2-Z. Electrophoresis. 2000. PMID: 10892737

Reversed-phase high-performance liquid chromatographic prefractionation of immunodepleted human serum proteins to enhance mass spectrometry identification of lower-abundant proteins.

Martosella J, Zolotarjova N, Liu H, Nicol G, Boyes BE. Martosella J, et al. J Proteome Res. 2005 Sep-Oct;4(5):1522-37. doi: 10.1021/pr050088l. J Proteome Res. 2005. PMID: 16212403

Capillary array reversed-phase liquid chromatography-based multidimensional separation system coupled with MALDI-TOF-TOF-MS detection for high-throughput proteome analysis.

Gu X, Deng C, Yan G, Zhang X. Gu X, et al. J Proteome Res. 2006 Nov;5(11):3186-96. doi: 10.1021/pr0602592. J Proteome Res. 2006. PMID: 17081071

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