Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 92

1.

Predicting nucleosome positioning using a duration Hidden Markov Model.

Xi L, Fondufe-Mittendorf Y, Xia L, Flatow J, Widom J, Wang JP.

BMC Bioinformatics. 2010 Jun 24;11:346. doi: 10.1186/1471-2105-11-346.

PMID:
20576140
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A generalized hidden Markov model for determining sequence-based predictors of nucleosome positioning.

Moser C, Gupta M.

Stat Appl Genet Mol Biol. 2012 Jan 6;11(2). pii: /j/sagmb.2012.11.issue-2/1544-6115.1707/1544-6115.1707.xml. doi: 10.2202/1544-6115.1707.

PMID:
22499697
[PubMed - indexed for MEDLINE]
3.

Predicting human nucleosome occupancy from primary sequence.

Gupta S, Dennis J, Thurman RE, Kingston R, Stamatoyannopoulos JA, Noble WS.

PLoS Comput Biol. 2008 Aug 22;4(8):e1000134. doi: 10.1371/journal.pcbi.1000134.

PMID:
18725940
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Structural features based genome-wide characterization and prediction of nucleosome organization.

Gan Y, Guan J, Zhou S, Zhang W.

BMC Bioinformatics. 2012 Mar 26;13:49. doi: 10.1186/1471-2105-13-49.

PMID:
22449207
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Sequence signatures of nucleosome positioning in Caenorhabditis elegans.

Chen K, Wang L, Yang M, Liu J, Xin C, Hu S, Yu J.

Genomics Proteomics Bioinformatics. 2010 Jun;8(2):92-102. doi: 10.1016/S1672-0229(10)60010-1.

PMID:
20691394
[PubMed - indexed for MEDLINE]
Free Article
6.

iNuc-PseKNC: a sequence-based predictor for predicting nucleosome positioning in genomes with pseudo k-tuple nucleotide composition.

Guo SH, Deng EZ, Xu LQ, Ding H, Lin H, Chen W, Chou KC.

Bioinformatics. 2014 Jun 1;30(11):1522-9. doi: 10.1093/bioinformatics/btu083. Epub 2014 Feb 6.

PMID:
24504871
[PubMed - indexed for MEDLINE]
7.

Nucleosome positioning from tiling microarray data.

Yassour M, Kaplan T, Jaimovich A, Friedman N.

Bioinformatics. 2008 Jul 1;24(13):i139-46. doi: 10.1093/bioinformatics/btn151.

PMID:
18586706
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Nucleosome positioning based on the sequence word composition.

Yi XF, He ZS, Chou KC, Kong XY.

Protein Pept Lett. 2012 Jan;19(1):79-90.

PMID:
21919856
[PubMed - indexed for MEDLINE]
9.

Sequence-dependent nucleosome positioning.

Chung HR, Vingron M.

J Mol Biol. 2009 Mar 13;386(5):1411-22. doi: 10.1016/j.jmb.2008.11.049. Epub 2008 Dec 3.

PMID:
19070622
[PubMed - indexed for MEDLINE]
10.

Prediction of nucleosome positioning in genomes: limits and perspectives of physical and bioinformatic approaches.

De Santis P, Morosetti S, Scipioni A.

J Biomol Struct Dyn. 2010 Jun;27(6):747-64.

PMID:
20232931
[PubMed - indexed for MEDLINE]
11.

Re-cracking the nucleosome positioning code.

Segal MR.

Stat Appl Genet Mol Biol. 2008;7(1):Article14. doi: 10.2202/1544-6115.1367. Epub 2008 Apr 21.

PMID:
18454729
[PubMed - indexed for MEDLINE]
12.

Modeling interactions between adjacent nucleosomes improves genome-wide predictions of nucleosome occupancy.

Lubliner S, Segal E.

Bioinformatics. 2009 Jun 15;25(12):i348-55. doi: 10.1093/bioinformatics/btp216.

PMID:
19478009
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Structure-based analysis of DNA sequence patterns guiding nucleosome positioning in vitro.

Cui F, Zhurkin VB.

J Biomol Struct Dyn. 2010 Jun;27(6):821-41.

PMID:
20232936
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A statistical thermodynamic approach for predicting the sequence-dependent nucleosome positioning along genomes.

Scipioni A, Morosetti S, De Santis P.

Biopolymers. 2009 Dec;91(12):1143-53. doi: 10.1002/bip.21276.

PMID:
19598227
[PubMed - indexed for MEDLINE]
15.

Active nucleosome positioning beyond intrinsic biophysics is revealed by in vitro reconstitution.

Korber P.

Biochem Soc Trans. 2012 Apr;40(2):377-82. doi: 10.1042/BST20110730. Review.

PMID:
22435815
[PubMed - indexed for MEDLINE]
16.

Transcriptional interaction-assisted identification of dynamic nucleosome positioning.

Dai Z, Dai X, Xiang Q, Feng J, Deng Y, Wang J, He C.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S31. doi: 10.1186/1471-2105-10-S1-S31.

PMID:
19208132
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genomic studies and computational predictions of nucleosome positions and formation energies.

Tolkunov D, Morozov AV.

Adv Protein Chem Struct Biol. 2010;79:1-57. doi: 10.1016/S1876-1623(10)79001-5. Review.

PMID:
20621280
[PubMed - indexed for MEDLINE]
18.

Dissecting nucleosome free regions by a segmental semi-Markov model.

Sun W, Xie W, Xu F, Grunstein M, Li KC.

PLoS One. 2009;4(3):e4721. doi: 10.1371/journal.pone.0004721. Epub 2009 Mar 6.

PMID:
19266098
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Computational prediction of nucleosome positioning by calculating the relative fragment frequency index of nucleosomal sequences.

Ogawa R, Kitagawa N, Ashida H, Saito R, Tomita M.

FEBS Lett. 2010 Apr 16;584(8):1498-502. doi: 10.1016/j.febslet.2010.02.067. Epub 2010 Mar 3.

PMID:
20206172
[PubMed - indexed for MEDLINE]
Free Article
20.

A multi-layer method to study genome-scale positions of nucleosomes.

Di Gesù V, Lo Bosco G, Pinello L, Yuan GC, Corona DF.

Genomics. 2009 Feb;93(2):140-5. doi: 10.1016/j.ygeno.2008.09.012. Epub 2008 Nov 21.

PMID:
18951969
[PubMed - indexed for MEDLINE]
Free Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk