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Items: 1 to 20 of 109

1.

Cryptic failure of partitioned Bayesian phylogenetic analyses: lost in the land of long trees.

Marshall DC.

Syst Biol. 2010 Jan;59(1):108-17. doi: 10.1093/sysbio/syp080. Epub 2009 Nov 17.

PMID:
20525623
2.

When trees grow too long: investigating the causes of highly inaccurate bayesian branch-length estimates.

Brown JM, Hedtke SM, Lemmon AR, Lemmon EM.

Syst Biol. 2010 Mar;59(2):145-61. doi: 10.1093/sysbio/syp081. Epub 2009 Dec 10.

PMID:
20525627
3.
4.

Searching for convergence in phylogenetic Markov chain Monte Carlo.

Beiko RG, Keith JM, Harlow TJ, Ragan MA.

Syst Biol. 2006 Aug;55(4):553-65.

PMID:
16857650
6.

Polytomies and Bayesian phylogenetic inference.

Lewis PO, Holder MT, Holsinger KE.

Syst Biol. 2005 Apr;54(2):241-53.

PMID:
16012095
7.

Tail paradox, partial identifiability, and influential priors in Bayesian branch length inference.

Rannala B, Zhu T, Yang Z.

Mol Biol Evol. 2012 Jan;29(1):325-35. doi: 10.1093/molbev/msr210. Epub 2011 Sep 2.

9.

Bayesian dating of shallow phylogenies with a relaxed clock.

Brown RP, Yang Z.

Syst Biol. 2010 Mar;59(2):119-31. doi: 10.1093/sysbio/syp082. Epub 2009 Dec 10.

PMID:
20525625
10.

Bayesian phylogeny analysis via stochastic approximation Monte Carlo.

Cheon S, Liang F.

Mol Phylogenet Evol. 2009 Nov;53(2):394-403. doi: 10.1016/j.ympev.2009.06.019. Epub 2009 Jul 7.

PMID:
19589389
11.

Bayesian estimation of ancestral character states on phylogenies.

Pagel M, Meade A, Barker D.

Syst Biol. 2004 Oct;53(5):673-84.

PMID:
15545248
12.

DensiTree: making sense of sets of phylogenetic trees.

Bouckaert RR.

Bioinformatics. 2010 May 15;26(10):1372-3. doi: 10.1093/bioinformatics/btq110. Epub 2010 Mar 12.

13.

Robustness of compound Dirichlet priors for Bayesian inference of branch lengths.

Zhang C, Rannala B, Yang Z.

Syst Biol. 2012 Oct;61(5):779-84. Epub 2012 Feb 10.

PMID:
22328570
14.

Modeling compositional heterogeneity.

Foster PG.

Syst Biol. 2004 Jun;53(3):485-95.

PMID:
15503675
15.

Data partitions and complex models in Bayesian analysis: the phylogeny of Gymnophthalmid lizards.

Castoe TA, Doan TM, Parkinson CL.

Syst Biol. 2004 Jun;53(3):448-69.

PMID:
15503673
16.

Branch-length prior influences Bayesian posterior probability of phylogeny.

Yang Z, Rannala B.

Syst Biol. 2005 Jun;54(3):455-70.

PMID:
16012111
17.

Phylogenetic MCMC algorithms are misleading on mixtures of trees.

Mossel E, Vigoda E.

Science. 2005 Sep 30;309(5744):2207-9.

18.

Detecting correlation between characters in a comparative analysis with uncertain phylogeny.

Huelsenbeck JP, Rannala B.

Evolution. 2003 Jun;57(6):1237-47.

PMID:
12894932
19.
20.

Bayesian phylogenetic inference via Markov chain Monte Carlo methods.

Mau B, Newton MA, Larget B.

Biometrics. 1999 Mar;55(1):1-12.

PMID:
11318142
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