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Results: 1 to 20 of 74

1.

A multilevel data integration resource for breast cancer study.

Mosca E, Alfieri R, Merelli I, Viti F, Calabria A, Milanesi L.

BMC Syst Biol. 2010 Jun 3;4:76. doi: 10.1186/1752-0509-4-76.

PMID:
20525248
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A data integration approach for cell cycle analysis oriented to model simulation in systems biology.

Alfieri R, Merelli I, Mosca E, Milanesi L.

BMC Syst Biol. 2007 Aug 1;1:35.

PMID:
17678529
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.

Merelli I, Viti F, Milanesi L.

BMC Bioinformatics. 2012;13 Suppl 14:S5. doi: 10.1186/1471-2105-13-S14-S5. Epub 2012 Sep 7.

PMID:
23095257
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

HPD: an online integrated human pathway database enabling systems biology studies.

Chowbina SR, Wu X, Zhang F, Li PM, Pandey R, Kasamsetty HN, Chen JY.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S5. doi: 10.1186/1471-2105-10-S11-S5.

PMID:
19811689
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The cell cycle DB: a systems biology approach to cell cycle analysis.

Alfieri R, Merelli I, Mosca E, Milanesi L.

Nucleic Acids Res. 2008 Jan;36(Database issue):D641-5. Epub 2007 Dec 26.

PMID:
18160409
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

PMID:
15723693
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

SYSTOMONAS--an integrated database for systems biology analysis of Pseudomonas.

Choi C, Münch R, Leupold S, Klein J, Siegel I, Thielen B, Benkert B, Kucklick M, Schobert M, Barthelmes J, Ebeling C, Haddad I, Scheer M, Grote A, Hiller K, Bunk B, Schreiber K, Retter I, Schomburg D, Jahn D.

Nucleic Acids Res. 2007 Jan;35(Database issue):D533-7.

PMID:
17202169
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Network analysis approach for biology.

Kwoh CK, Ng PY.

Cell Mol Life Sci. 2007 Jul;64(14):1739-51. Review.

PMID:
17415520
[PubMed - indexed for MEDLINE]
9.

SysBioMed report: advancing systems biology for medical applications.

Wolkenhauer O, Fell D, De Meyts P, Blüthgen N, Herzel H, Le Novère N, Höfer T, Schürrle K, van Leeuwen I.

IET Syst Biol. 2009 May;3(3):131-6. doi: 10.1049/iet-syb.2009.0005.

PMID:
19449974
[PubMed - indexed for MEDLINE]
10.

Identification of functionally related genes using data mining and data integration: a breast cancer case study.

Mosca E, Bertoli G, Piscitelli E, Vilardo L, Reinbold RA, Zucchi I, Milanesi L.

BMC Bioinformatics. 2009 Oct 15;10 Suppl 12:S8. doi: 10.1186/1471-2105-10-S12-S8.

PMID:
19828084
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Mixture classification model based on clinical markers for breast cancer prognosis.

Zeng T, Liu J.

Artif Intell Med. 2010 Feb-Mar;48(2-3):129-37. doi: 10.1016/j.artmed.2009.07.008. Epub 2009 Dec 14.

PMID:
20005686
[PubMed - indexed for MEDLINE]
12.

IMGT, a system and an ontology that bridge biological and computational spheres in bioinformatics.

Lefranc MP, Giudicelli V, Regnier L, Duroux P.

Brief Bioinform. 2008 Jul;9(4):263-75. doi: 10.1093/bib/bbn014. Epub 2008 Apr 19. Review.

PMID:
18424816
[PubMed - indexed for MEDLINE]
Free Article
13.

Linking experimental results, biological networks and sequence analysis methods using Ontologies and Generalised Data Structures.

Koehler J, Rawlings C, Verrier P, Mitchell R, Skusa A, Ruegg A, Philippi S.

In Silico Biol. 2005;5(1):33-44.

PMID:
15972003
[PubMed - indexed for MEDLINE]
14.

MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa.

Catalano D, Licciulli F, Turi A, Grillo G, Saccone C, D'Elia D.

BMC Bioinformatics. 2006 Jan 24;7:36.

PMID:
16433928
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

ROCK: a resource for integrative breast cancer data analysis.

Ur-Rehman S, Gao Q, Mitsopoulos C, Zvelebil M.

Breast Cancer Res Treat. 2013 Jun;139(3):907-21. doi: 10.1007/s10549-013-2593-z. Epub 2013 Jun 12.

PMID:
23756628
[PubMed - indexed for MEDLINE]
16.

Dynamic deterministic effects propagation networks: learning signalling pathways from longitudinal protein array data.

Bender C, Henjes F, Fröhlich H, Wiemann S, Korf U, Beissbarth T.

Bioinformatics. 2010 Sep 15;26(18):i596-602. doi: 10.1093/bioinformatics/btq385.

PMID:
20823327
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Cancer systems biology: exploring cancer-associated genes on cellular networks.

Wang E, Lenferink A, O'Connor-McCourt M.

Cell Mol Life Sci. 2007 Jul;64(14):1752-62. Review.

PMID:
17415519
[PubMed - indexed for MEDLINE]
18.

Applications of cellular systems biology in breast cancer patient stratification and diagnostics.

Critchley-Thorne RJ, Miller SM, Taylor DL, Lingle WL.

Comb Chem High Throughput Screen. 2009 Nov;12(9):860-9. Review.

PMID:
19531004
[PubMed - indexed for MEDLINE]
19.

The semantic metadatabase (SEMEDA): ontology based integration of federated molecular biological data sources.

Köhler J, Schulze-Kremer S.

In Silico Biol. 2002;2(3):219-31.

PMID:
12542408
[PubMed - indexed for MEDLINE]
20.

The mouse genome database (MGD): new features facilitating a model system.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7. Epub 2006 Nov 29.

PMID:
17135206
[PubMed - indexed for MEDLINE]
Free PMC Article

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