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Results: 1 to 20 of 98

1.

Using the ensembl genome server to browse genomic sequence data.

Fernández-Suárez XM, Schuster MK.

Curr Protoc Bioinformatics. 2010 Jun;Chapter 1:Unit1.15. doi: 10.1002/0471250953.bi0115s30.

PMID:
20521244
[PubMed - indexed for MEDLINE]
2.

Using the Ensembl genome server to browse genomic sequence data.

Fernández-Suárez XM, Schuster MK.

Curr Protoc Bioinformatics. 2007 Jan;Chapter 1:Unit 1.15. doi: 10.1002/0471250953.bi0115s16.

PMID:
18428779
[PubMed - indexed for MEDLINE]
3.

The Ensembl genome database project.

Hubbard T, Barker D, Birney E, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, Durbin R, Eyras E, Gilbert J, Hammond M, Huminiecki L, Kasprzyk A, Lehvaslaiho H, Lijnzaad P, Melsopp C, Mongin E, Pettett R, Pocock M, Potter S, Rust A, Schmidt E, Searle S, Slater G, Smith J, Spooner W, Stabenau A, Stalker J, Stupka E, Ureta-Vidal A, Vastrik I, Clamp M.

Nucleic Acids Res. 2002 Jan 1;30(1):38-41.

PMID:
11752248
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Ensembl variation resources.

Chen Y, Cunningham F, Rios D, McLaren WM, Smith J, Pritchard B, Spudich GM, Brent S, Kulesha E, Marin-Garcia P, Smedley D, Birney E, Flicek P.

BMC Genomics. 2010 May 11;11:293. doi: 10.1186/1471-2164-11-293.

PMID:
20459805
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Ensembl 2002: accommodating comparative genomics.

Clamp M, Andrews D, Barker D, Bevan P, Cameron G, Chen Y, Clark L, Cox T, Cuff J, Curwen V, Down T, Durbin R, Eyras E, Gilbert J, Hammond M, Hubbard T, Kasprzyk A, Keefe D, Lehvaslaiho H, Iyer V, Melsopp C, Mongin E, Pettett R, Potter S, Rust A, Schmidt E, Searle S, Slater G, Smith J, Spooner W, Stabenau A, Stalker J, Stupka E, Ureta-Vidal A, Vastrik I, Birney E.

Nucleic Acids Res. 2003 Jan 1;31(1):38-42.

PMID:
12519943
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome browser.

Stenger JE, Xu H, Haynes C, Hauser ER, Pericak-Vance M, Goldschmidt-Clermont PJ, Vance JM.

BMC Bioinformatics. 2005 Apr 12;6:95.

PMID:
15826305
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genome browsing with Ensembl: a practical overview.

Spudich G, Fernández-Suárez XM, Birney E.

Brief Funct Genomic Proteomic. 2007 Sep;6(3):202-19. Epub 2007 Oct 29.

PMID:
17967807
[PubMed - indexed for MEDLINE]
Free Article
8.

Ensembl 2004.

Birney E, Andrews D, Bevan P, Caccamo M, Cameron G, Chen Y, Clarke L, Coates G, Cox T, Cuff J, Curwen V, Cutts T, Down T, Durbin R, Eyras E, Fernandez-Suarez XM, Gane P, Gibbins B, Gilbert J, Hammond M, Hotz H, Iyer V, Kahari A, Jekosch K, Kasprzyk A, Keefe D, Keenan S, Lehvaslaiho H, McVicker G, Melsopp C, Meidl P, Mongin E, Pettett R, Potter S, Proctor G, Rae M, Searle S, Slater G, Smedley D, Smith J, Spooner W, Stabenau A, Stalker J, Storey R, Ureta-Vidal A, Woodwark C, Clamp M, Hubbard T.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D468-70.

PMID:
14681459
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Biological information: making it accessible and integrated (and trying to make sense of it).

Hubbard T.

Bioinformatics. 2002;18 Suppl 2:S140.

PMID:
12385995
[PubMed - indexed for MEDLINE]
Free Article
10.
11.

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.

PMID:
17123449
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The MicrobesOnline Web site for comparative genomics.

Alm EJ, Huang KH, Price MN, Koche RP, Keller K, Dubchak IL, Arkin AP.

Genome Res. 2005 Jul;15(7):1015-22.

PMID:
15998914
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

GeneLynx: a gene-centric portal to the human genome.

Lenhard B, Hayes WS, Wasserman WW.

Genome Res. 2001 Dec;11(12):2151-7.

PMID:
11731507
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Using Apollo to browse and edit genome annotations.

Misra S, Harris N.

Curr Protoc Bioinformatics. 2006 Jan;Chapter 9:Unit 9.5. doi: 10.1002/0471250953.bi0905s12.

PMID:
18428771
[PubMed - indexed for MEDLINE]
15.

Ensembl Genomes: extending Ensembl across the taxonomic space.

Kersey PJ, Lawson D, Birney E, Derwent PS, Haimel M, Herrero J, Keenan S, Kerhornou A, Koscielny G, Kähäri A, Kinsella RJ, Kulesha E, Maheswari U, Megy K, Nuhn M, Proctor G, Staines D, Valentin F, Vilella AJ, Yates A.

Nucleic Acids Res. 2010 Jan;38(Database issue):D563-9. doi: 10.1093/nar/gkp871. Epub 2009 Nov 1.

PMID:
19884133
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.

Gattiker A, Rischatsch R, Demougin P, Voegeli S, Dietrich FS, Philippsen P, Primig M.

BMC Genomics. 2007 Jan 9;8:9.

PMID:
17212814
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The Legume Information System (LIS): an integrated information resource for comparative legume biology.

Gonzales MD, Archuleta E, Farmer A, Gajendran K, Grant D, Shoemaker R, Beavis WD, Waugh ME.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D660-5.

PMID:
15608283
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The ARKdb: genome databases for farmed and other animals.

Hu J, Mungall C, Law A, Papworth R, Nelson JP, Brown A, Simpson I, Leckie S, Burt DW, Hillyard AL, Archibald AL.

Nucleic Acids Res. 2001 Jan 1;29(1):106-10.

PMID:
11125062
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Using the NCBI Map Viewer to browse genomic sequence data.

Wolfsberg TG.

Curr Protoc Hum Genet. 2011 Apr;Chapter 18:Unit18.5. doi: 10.1002/0471142905.hg1805s69.

PMID:
21480181
[PubMed - indexed for MEDLINE]
20.

Touring Ensembl: a practical guide to genome browsing.

Spudich GM, Fernández-Suárez XM.

BMC Genomics. 2010 May 11;11:295. doi: 10.1186/1471-2164-11-295.

PMID:
20459808
[PubMed - indexed for MEDLINE]
Free PMC Article

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