Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 100

Similar articles for PubMed (Select 20507584)

1.

Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset.

Zhu Q, Miecznikowski JC, Halfon MS.

BMC Bioinformatics. 2010 May 27;11:285. doi: 10.1186/1471-2105-11-285.

2.

A wholly defined Agilent microarray spike-in dataset.

Zhu Q, Miecznikowski JC, Halfon MS.

Bioinformatics. 2011 May 1;27(9):1284-9. doi: 10.1093/bioinformatics/btr135. Epub 2011 Mar 16.

3.

Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset.

Choe SE, Boutros M, Michelson AM, Church GM, Halfon MS.

Genome Biol. 2005;6(2):R16. Epub 2005 Jan 28.

4.

Methods for evaluating gene expression from Affymetrix microarray datasets.

Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.

BMC Bioinformatics. 2008 Jun 17;9:284. doi: 10.1186/1471-2105-9-284.

5.
6.

A reanalysis of a published Affymetrix GeneChip control dataset.

Dabney AR, Storey JD.

Genome Biol. 2006;7(3):401. Epub 2006 Mar 22.

7.

Quality control of Platinum Spike dataset by probe-level mixed models.

Khamiakova T, Shkedy Z, Amaratunga D, Talloen W, Göhlmann H, Bijnens L, Kasim A.

Math Biosci. 2014 Feb;248:1-10. doi: 10.1016/j.mbs.2013.11.004. Epub 2013 Dec 1.

PMID:
24300569
8.

Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

J Neurosci Methods. 2006 Apr 15;152(1-2):179-89. Epub 2005 Oct 25.

PMID:
16253343
9.

Evaluation of gene expression data generated from expired Affymetrix GeneChip® microarrays using MAQC reference RNA samples.

Wen Z, Wang C, Shi Q, Huang Y, Su Z, Hong H, Tong W, Shi L.

BMC Bioinformatics. 2010 Oct 7;11 Suppl 6:S10. doi: 10.1186/1471-2105-11-S6-S10.

10.

Comparison of gene expression microarray data with count-based RNA measurements informs microarray interpretation.

Richard AC, Lyons PA, Peters JE, Biasci D, Flint SM, Lee JC, McKinney EF, Siegel RM, Smith KG.

BMC Genomics. 2014 Aug 4;15:649. doi: 10.1186/1471-2164-15-649.

11.

BEAT: Bioinformatics Exon Array Tool to store, analyze and visualize Affymetrix GeneChip Human Exon Array data from disease experiments.

Consiglio A, Carella M, De Caro G, Delle Foglie G, Giovannelli C, Grillo G, Ianigro M, Licciulli F, Palumbo O, Piepoli A, Ranieri E, Liuni S.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S21. doi: 10.1186/1471-2105-13-S4-S21.

12.

Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.

Sásik R, Calvo E, Corbeil J.

Bioinformatics. 2002 Dec;18(12):1633-40.

13.

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

14.

AffyMiner: mining differentially expressed genes and biological knowledge in GeneChip microarray data.

Lu G, Nguyen TV, Xia Y, Fromm M.

BMC Bioinformatics. 2006 Dec 12;7 Suppl 4:S26.

15.

SplicerAV: a tool for mining microarray expression data for changes in RNA processing.

Robinson TJ, Dinan MA, Dewhirst M, Garcia-Blanco MA, Pearson JL.

BMC Bioinformatics. 2010 Feb 25;11:108. doi: 10.1186/1471-2105-11-108.

16.

Gene expression and isoform variation analysis using Affymetrix Exon Arrays.

Bemmo A, Benovoy D, Kwan T, Gaffney DJ, Jensen RV, Majewski J.

BMC Genomics. 2008 Nov 7;9:529. doi: 10.1186/1471-2164-9-529. Erratum in: BMC Genomics. 2009 Mar 23;10. doi: 10.1186/1471-2164-10-121.

17.

Assessing affymetrix GeneChip microarray quality.

McCall MN, Murakami PN, Lukk M, Huber W, Irizarry RA.

BMC Bioinformatics. 2011 May 7;12:137. doi: 10.1186/1471-2105-12-137.

18.

The effect of oligonucleotide microarray data pre-processing on the analysis of patient-cohort studies.

Verhaak RG, Staal FJ, Valk PJ, Lowenberg B, Reinders MJ, de Ridder D.

BMC Bioinformatics. 2006 Mar 2;7:105.

19.

Affymetrix oligonucleotide analysis of gene expression in the injured heart.

Yanagawa B, Taylor L, Deisher TA, Ng R, Schreiner GF, Triche TJ, Yang D, McManus BM.

Methods Mol Med. 2005;112:305-20. Review.

PMID:
16010026
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk