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Results: 1 to 20 of 109

1.

Distinct epigenomic landscapes of pluripotent and lineage-committed human cells.

Hawkins RD, Hon GC, Lee LK, Ngo Q, Lister R, Pelizzola M, Edsall LE, Kuan S, Luu Y, Klugman S, Antosiewicz-Bourget J, Ye Z, Espinoza C, Agarwahl S, Shen L, Ruotti V, Wang W, Stewart R, Thomson JA, Ecker JR, Ren B.

Cell Stem Cell. 2010 May 7;6(5):479-91. doi: 10.1016/j.stem.2010.03.018.

PMID:
20452322
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.

Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, Alvarez P, Brockman W, Kim TK, Koche RP, Lee W, Mendenhall E, O'Donovan A, Presser A, Russ C, Xie X, Meissner A, Wernig M, Jaenisch R, Nusbaum C, Lander ES, Bernstein BE.

Nature. 2007 Aug 2;448(7153):553-60. Epub 2007 Jul 1.

PMID:
17603471
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency.

Hawkins RD, Hon GC, Yang C, Antosiewicz-Bourget JE, Lee LK, Ngo QM, Klugman S, Ching KA, Edsall LE, Ye Z, Kuan S, Yu P, Liu H, Zhang X, Green RD, Lobanenkov VV, Stewart R, Thomson JA, Ren B.

Cell Res. 2011 Oct;21(10):1393-409. doi: 10.1038/cr.2011.146. Epub 2011 Aug 30.

PMID:
21876557
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Epigenetic landscaping during hESC differentiation to neural cells.

Golebiewska A, Atkinson SP, Lako M, Armstrong L.

Stem Cells. 2009 Jun;27(6):1298-308. doi: 10.1002/stem.59.

PMID:
19489095
[PubMed - indexed for MEDLINE]
Free Article
5.

Genome-scale DNA methylation maps of pluripotent and differentiated cells.

Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, Sivachenko A, Zhang X, Bernstein BE, Nusbaum C, Jaffe DB, Gnirke A, Jaenisch R, Lander ES.

Nature. 2008 Aug 7;454(7205):766-70. doi: 10.1038/nature07107. Epub 2008 Jul 6.

PMID:
18600261
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Cell fate potential of human pluripotent stem cells is encoded by histone modifications.

Hong SH, Rampalli S, Lee JB, McNicol J, Collins T, Draper JS, Bhatia M.

Cell Stem Cell. 2011 Jul 8;9(1):24-36. doi: 10.1016/j.stem.2011.06.002.

PMID:
21726831
[PubMed - indexed for MEDLINE]
Free Article
7.

Epigenetic signatures and temporal expression of lineage-specific genes in hESCs during differentiation to hepatocytes in vitro.

Kim H, Jang MJ, Kang MJ, Han YM.

Hum Mol Genet. 2011 Feb 1;20(3):401-12. doi: 10.1093/hmg/ddq476. Epub 2010 Nov 8.

PMID:
21059703
[PubMed - indexed for MEDLINE]
Free Article
8.

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells.

Lister R, Pelizzola M, Kida YS, Hawkins RD, Nery JR, Hon G, Antosiewicz-Bourget J, O'Malley R, Castanon R, Klugman S, Downes M, Yu R, Stewart R, Ren B, Thomson JA, Evans RM, Ecker JR.

Nature. 2011 Mar 3;471(7336):68-73. doi: 10.1038/nature09798. Epub 2011 Feb 2. Erratum in: Nature. 2014 Oct 2;514(7520):126.

PMID:
21289626
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos.

Lindeman LC, Winata CL, Aanes H, Mathavan S, Alestrom P, Collas P.

Int J Dev Biol. 2010;54(5):803-13. doi: 10.1387/ijdb.103081ll.

PMID:
20336603
[PubMed - indexed for MEDLINE]
Free Article
10.

DNA methylation profiles define stem cell identity and reveal a tight embryonic-extraembryonic lineage boundary.

Senner CE, Krueger F, Oxley D, Andrews S, Hemberger M.

Stem Cells. 2012 Dec;30(12):2732-45. doi: 10.1002/stem.1249.

PMID:
23034951
[PubMed - indexed for MEDLINE]
Free Article
11.

Genome-wide epigenetic analysis of human pluripotent stem cells by ChIP and ChIP-Seq.

Hitchler MJ, Rice JC.

Methods Mol Biol. 2011;767:253-67. doi: 10.1007/978-1-61779-201-4_19.

PMID:
21822881
[PubMed - indexed for MEDLINE]
12.

Epigenetic regulation of pluripotency and differentiation.

Boland MJ, Nazor KL, Loring JF.

Circ Res. 2014 Jul 7;115(2):311-24. doi: 10.1161/CIRCRESAHA.115.301517. Review.

PMID:
24989490
[PubMed - indexed for MEDLINE]
13.

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains.

Ku M, Koche RP, Rheinbay E, Mendenhall EM, Endoh M, Mikkelsen TS, Presser A, Nusbaum C, Xie X, Chi AS, Adli M, Kasif S, Ptaszek LM, Cowan CA, Lander ES, Koseki H, Bernstein BE.

PLoS Genet. 2008 Oct;4(10):e1000242. doi: 10.1371/journal.pgen.1000242. Epub 2008 Oct 31.

PMID:
18974828
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Transcriptional regulation by histone modifications: towards a theory of chromatin re-organization during stem cell differentiation.

Binder H, Steiner L, Przybilla J, Rohlf T, Prohaska S, Galle J.

Phys Biol. 2013 Apr;10(2):026006. doi: 10.1088/1478-3975/10/2/026006. Epub 2013 Mar 12.

PMID:
23481318
[PubMed - indexed for MEDLINE]
15.

Genomic distribution and inter-sample variation of non-CpG methylation across human cell types.

Ziller MJ, Müller F, Liao J, Zhang Y, Gu H, Bock C, Boyle P, Epstein CB, Bernstein BE, Lengauer T, Gnirke A, Meissner A.

PLoS Genet. 2011 Dec;7(12):e1002389. doi: 10.1371/journal.pgen.1002389. Epub 2011 Dec 8.

PMID:
22174693
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability.

Cortázar D, Kunz C, Selfridge J, Lettieri T, Saito Y, MacDougall E, Wirz A, Schuermann D, Jacobs AL, Siegrist F, Steinacher R, Jiricny J, Bird A, Schär P.

Nature. 2011 Feb 17;470(7334):419-23. doi: 10.1038/nature09672. Epub 2011 Jan 30.

PMID:
21278727
[PubMed - indexed for MEDLINE]
17.

Demarcation of stable subpopulations within the pluripotent hESC compartment.

Bhatia S, Pilquil C, Roth-Albin I, Draper JS.

PLoS One. 2013;8(2):e57276. doi: 10.1371/journal.pone.0057276. Epub 2013 Feb 21.

PMID:
23437358
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A unique epigenetic signature is associated with active DNA replication loci in human embryonic stem cells.

Li B, Su T, Ferrari R, Li JY, Kurdistani SK.

Epigenetics. 2014 Feb;9(2):257-67. doi: 10.4161/epi.26870. Epub 2013 Oct 29.

PMID:
24172870
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells.

Pan G, Tian S, Nie J, Yang C, Ruotti V, Wei H, Jonsdottir GA, Stewart R, Thomson JA.

Cell Stem Cell. 2007 Sep 13;1(3):299-312. doi: 10.1016/j.stem.2007.08.003.

PMID:
18371364
[PubMed - indexed for MEDLINE]
Free Article
20.

Dynamic epigenetic regulation of the Oct4 and Nanog regulatory regions during neural differentiation in rhesus nuclear transfer embryonic stem cells.

Wang K, Chen Y, Chang EA, Knott JG, Cibelli JB.

Cloning Stem Cells. 2009 Dec;11(4):483-96. doi: 10.1089/clo.2009.0019.

PMID:
20025521
[PubMed - indexed for MEDLINE]
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