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Results: 1 to 20 of 110

1.

Genomics of long-range regulatory elements.

Noonan JP, McCallion AS.

Annu Rev Genomics Hum Genet. 2010;11:1-23. doi: 10.1146/annurev-genom-082509-141651. Review.

PMID:
20438361
[PubMed - indexed for MEDLINE]
2.

Genomic regulatory blocks in vertebrates and implications in human disease.

Navratilova P, Becker TS.

Brief Funct Genomic Proteomic. 2009 Jul;8(4):333-42. doi: 10.1093/bfgp/elp019. Epub 2009 Jun 26. Review.

PMID:
19561171
[PubMed - indexed for MEDLINE]
Free Article
3.

New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes.

Parker BJ, Moltke I, Roth A, Washietl S, Wen J, Kellis M, Breaker R, Pedersen JS.

Genome Res. 2011 Nov;21(11):1929-43. doi: 10.1101/gr.112516.110. Epub 2011 Oct 12.

PMID:
21994249
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Structural relationships between highly conserved elements and genes in vertebrate genomes.

Sun H, Skogerbø G, Wang Z, Liu W, Li Y.

PLoS One. 2008;3(11):e3727. doi: 10.1371/journal.pone.0003727. Epub 2008 Nov 14.

PMID:
19008958
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information.

Meireles-Filho AC, Stark A.

Curr Opin Genet Dev. 2009 Dec;19(6):565-70. doi: 10.1016/j.gde.2009.10.006. Epub 2009 Nov 11. Review.

PMID:
19913403
[PubMed - indexed for MEDLINE]
6.

Comparative genomics using fugu: a tool for the identification of conserved vertebrate cis-regulatory elements.

Venkatesh B, Yap WH.

Bioessays. 2005 Jan;27(1):100-7. Review.

PMID:
15612032
[PubMed - indexed for MEDLINE]
7.

Evolutionary divergence of vertebrate Hoxb2 expression patterns and transcriptional regulatory loci.

Scemama JL, Hunter M, McCallum J, Prince V, Stellwag E.

J Exp Zool. 2002 Oct 15;294(3):285-99.

PMID:
12362434
[PubMed - indexed for MEDLINE]
8.

Cis-regulation and conserved non-coding elements in amphioxus.

Beaster-Jones L.

Brief Funct Genomics. 2012 Mar;11(2):118-30. doi: 10.1093/bfgp/els006. Epub 2012 Mar 7. Review.

PMID:
22402505
[PubMed - indexed for MEDLINE]
9.

Predicting tissue specific cis-regulatory modules in the human genome using pairs of co-occurring motifs.

Girgis HZ, Ovcharenko I.

BMC Bioinformatics. 2012 Feb 7;13:25. doi: 10.1186/1471-2105-13-25.

PMID:
22313678
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genomic identification of regulatory elements by evolutionary sequence comparison and functional analysis.

Loots GG.

Adv Genet. 2008;61:269-93. doi: 10.1016/S0065-2660(07)00010-7. Review.

PMID:
18282510
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Human-zebrafish non-coding conserved elements act in vivo to regulate transcription.

Shin JT, Priest JR, Ovcharenko I, Ronco A, Moore RK, Burns CG, MacRae CA.

Nucleic Acids Res. 2005 Sep 22;33(17):5437-45. Print 2005.

PMID:
16179648
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Disruption of long-range gene regulation in human genetic disease: a kaleidoscope of general principles, diverse mechanisms and unique phenotypic consequences.

Bhatia S, Kleinjan DA.

Hum Genet. 2014 Jul;133(7):815-45. doi: 10.1007/s00439-014-1424-6. Epub 2014 Feb 5. Review.

PMID:
24496500
[PubMed - indexed for MEDLINE]
13.

Asymmetrical distribution of non-conserved regulatory sequences at PHOX2B is reflected at the ENCODE loci and illuminates a possible genome-wide trend.

McGaughey DM, Stine ZE, Huynh JL, Vinton RM, McCallion AS.

BMC Genomics. 2009 Jan 7;10:8. doi: 10.1186/1471-2164-10-8.

PMID:
19128492
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage.

Sanges R, Kalmar E, Claudiani P, D'Amato M, Muller F, Stupka E.

Genome Biol. 2006;7(7):R56.

PMID:
16859531
[PubMed - indexed for MEDLINE]
Free PMC Article
15.
16.

Evolution of cis-acting elements in 5' flanking regions of vertebrate actin genes.

Liu T, Wu J, He F.

J Mol Evol. 2000 Jan;50(1):22-30.

PMID:
10654256
[PubMed - indexed for MEDLINE]
17.

Comparative genomics using teleost fish helps to systematically identify target gene bodies of functionally defined human enhancers.

Parveen N, Masood A, Iftikhar N, Minhas BF, Minhas R, Nawaz U, Abbasi AA.

BMC Genomics. 2013 Feb 23;14:122. doi: 10.1186/1471-2164-14-122.

PMID:
23432897
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Conserved and non-conserved enhancers direct tissue specific transcription in ancient germ layer specific developmental control genes.

Chatterjee S, Bourque G, Lufkin T.

BMC Dev Biol. 2011 Oct 20;11:63. doi: 10.1186/1471-213X-11-63.

PMID:
22011226
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The identification and functional characterisation of conserved regulatory elements in developmental genes.

Dickmeis T, Müller F.

Brief Funct Genomic Proteomic. 2005 Feb;3(4):332-50. Review.

PMID:
15814024
[PubMed - indexed for MEDLINE]
Free Article
20.

Identifying synonymous regulatory elements in vertebrate genomes.

Ovcharenko I, Nobrega MA.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W403-7.

PMID:
15980499
[PubMed - indexed for MEDLINE]
Free PMC Article

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